ViewGene
Locus Name:
GeneID:
Location:

GeneID:2726
TrivialName: PA14_21580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21580
PAO1 Ortholog Locus:PA3283
Sequence Length:855
Protein Length:284
Start: 1870475
Stop: 1871329
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06671.1|AE004750_9 (AE004750) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 282/284 (99%), Positives = 282/284 (99%)
Sequence:
ATGCAACGGGAATTCGTCAGCGGCGCCGGGCTAGGCCTGCGTCGCGCGCTGCTGGAGCCGCTCGGCGCCGGC
GATGAGGTCCGGGTCGACTTCCTCGAGGTCGCCCCGGAGAACTGGATCGGCATCGGCGGCCGTCTCGGCCGC
CAGTTCCGCGAGCTGACCGAGCGCCTGCCGTTCCTCTGCCATGGTCTGTCTCTCAACCTCGGCGGCTACGCT
CCGCTGGACATGTCGTTGCTGCGCGCGATCAAGGGTTTCATCGAGCAGCATGGCATCCGTGCCTACAGCGAG
CACCTGTCTGCCTGCGCCGACGACGGCCAGCTCTACGACCTGATGCCGCTGCCGTTCAGCGACGAGTCGGTG
CGCCGGGTCGCCGAACGGGTCCGGGTGGTACAGGACGTCCTCGAGCGGCCGTTGATCGTCGAGAACGTCTCG
GCGTATGCGCGCTTGCCGGGCGAGCTGGAAGAGGTCGATTTCGTCCGCGCGGTACTGGAGGAAGCCGATTGC
CAATTGCTGCTGGACGTCAACAACGTCTACGTCAACGCCTGCAACTTCGGTTTCGACGCACACGCCTACATC
GCCGCGATGCCCAGCCGGAGGATCGCCTACCTGCACATGGCCGGGCACGACGAACAGGGCGCCAGCCTGAAG
ATTGACACCCATGGCGCGCCGGTCTGCGATCCGGTCTGGGAACTGCTGGCACATGCCTATGCCTGCCATGGC
GAACGCCCGACGCTGCTGGAGCGCGATTTCAACCTCCCGCCACTGAGCGAGCTGTATGCCGAAACCGATCGC
ATCCGCGAGCTGCAGCGGCGCAGCGGTGAAGCGCAACTGCGCAGCCTGGGGTACGGCACATGA
Translation:
MQREFVSGAGLGLRRALLEPLGAGDEVRVDFLEVAPENWIGIGGRLGRQFRELTERLPFLCHGLSLNLGGYA
PLDMSLLRAIKGFIEQHGIRAYSEHLSACADDGQLYDLMPLPFSDESVRRVAERVRVVQDVLERPLIVENVS
AYARLPGELEEVDFVRAVLEEADCQLLLDVNNVYVNACNFGFDAHAYIAAMPSRRIAYLHMAGHDEQGASLK
IDTHGAPVCDPVWELLAHAYACHGERPTLLERDFNLPPLSELYAETDRIRELQRRSGEAQLRSLGYGT*
AnnotationID:2734GeneID:2726
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 06:06:49
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3283
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5455




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22599




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32265




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2726_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2726
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4455
                           PA3283_tr
                           translation of PA3283
                           284
                           99.29
                           99.29
                           0
                           1465.0
     

     
     
129185
                           gb|AAG06671.1|AE004750_9
                           (AE004750) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           284
                           99.29
                           99.29
                           0
                           1465.0
     

     
     
129186
                           gb|AAN68010.1|AE016434_1
                           (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
                           285
                           52.98
                           67.36
                           9
                           769.0
     

     
     
4456
                           PA4106_tr
                           translation of PA4106
                           284
                           52.46
                           65.49
                           8
                           751.0
     

     
     
129187
                           gb|AAG07493.1|AE004827_2
                           (AE004827) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           284
                           52.46
                           65.49
                           8
                           751.0
     

     






      

          
GC ORFID: 45728How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3283Glimmer Score: 

          
Start: 3083456Stop: 3082602

          
Length: 855


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3283 translation of PA3283Homolog Bit Score 568.0

          
Other Homologs:  t_PA4106 (ORF: BLASTX 298.0), t_PA3283 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACGGGAATTCGTCAGCGGCGCCGGGCTAGGCCTGCGTCGCGCGCTGCTGGAGCCGCTCGGCGCCGGC 
GATGAGGTCCGGGTCGACTTCCTCGAGGTCGCCCCGGAGAACTGGATCGGCATCGGCGGCCGTCTCGGCCGC 
CAGTTCCGCGAGCTGACCGAGCGCCTGCCGTTCCTCTGCCATGGTCTGTCTCTCAACCTCGGCGGCTACGCT 
CCGCTGGACATGTCGTTGCTGCGCGCGATCAAGGGTTTCATCGAGCAGCATGGCATCCGTGCCTACAGCGAG 
CACCTGTCTGCCTGCGCCGACGACGGCCAGCTCTACGACCTGATGCCGCTGCCGTTCAGCGACGAGTCGGTG 
CGCCGGGTCGCCGAACGGGTCCGGGTGGTACAGGACGTCCTCGAGCGGCCGTTGATCGTCGAGAACGTCTCG 
GCGTATGCGCGCTTGCCGGGCGAGCTGGAAGAGGTCGATTTCGTCCGCGCGGTACTGGAGGAAGCCGATTGC 
CAATTGCTGCTGGACGTCAACAACGTCTACGTCAACGCCTGCAACTTCGGTTTCGACGCACACGCCTACATC 
GCCGCGATGCCCAGCCGGAGGATCGCCTACCTGCACATGGCCGGGCACGACGAACAGGGCGCCAGCCTGAAG 
ATTGACACCCATGGCGCGCCGGTCTGCGATCCGGTCTGGGAACTGCTGGCACATGCCTATGCCTGCCATGGC 
GAACGCCCGACGCTGCTGGAGCGCGATTTCAACCTCCCGCCACTGAGCGAGCTGTATGCCGAAACCGATCGC 
ATCCGCGAGCTGCAGCGGCGCAGCGGTGAAGCGCAACTGCGCAGCCTGGGGTACGGCACATGA