ViewGene

Locus Name:
GeneID:
Location:

GeneID: 2724

TrivialName: PA14_37410

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_37410

PAO1 Ortholog Locus: PA2095

Sequence Length: 846

Protein Length: 281

Start: 3329756

Stop: 3330601

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05483.1|AE004637_3 (AE004637) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 278/281 (98%), Positives = 281/281 (100%)

Sequence:

ATGGGTTGCCAGCAACACGCATGGCCGGCGCACGCGCCTGAGCGGGTCGAGGCCGAGGTCAACTATATCCGC
GACAGCGGCGAGCGACCCGTCGCCTACACCTATCCGGCCCCCGCCGGGACGCCGCAGCGCAGCGCGCTGTTG
CAGCCGACCCGGGTGGCGATCCGCAATGCGCGTCTGCTGGCGCAACCGGCCAGCCTGGAGCGCGAGGGTTTC
CAACTGGTGCGCGAGGCGAGCGCGGTGGGCGATTTCGAGGATGAAGCCCAGGTTCGTGAACGCTACTACCCG
GAAAGCATCGCCCTGCTCCGCCGCCTGACCGGCGCCGCCGAGGCGGTGATCTTCGACCACACGCTGCGCGTC
GACCAAGCCGGGCGCGAAGAACGCGGCCTGCGCGAACCGGTGCGCTACGTGCACAACGACCAGACCCTGCGC
TCGGCGCCGCGCCGGGTCCGCGACCACCTGCCGGCGGAACGCGCCGAACGGCGCCTGGCCGGACGCTTCCAG
ATCGTCAACCTGTGGCGTCCGTTCGGCCACCCGGCGCAGCGCGCGCCGCTGGCGTTGCTGGACGCCCGCAGC
CTGGCGTTCGACGACCTGGTGGCCAGTGACCTGGTGTACCGCGACAAGGTGGGCGAAACCTACTCGGTCAAG
CCCAACCCGGAGCACCGCTGGTACTACTACCCGCACCTGCTGCCGGAGGAAGCGCTGCTGCTGAAGATCTAC
GATTCGCGGGAGGACGCGCAGGCCCGCCTCGGCGCGCACACCGCCTTCGACGATCCCTGCACCCCGGCCGAT
GCGCCGCCGCGGCAGAGTATCGAACTGCGTTGCCTGCTGTTCTTCGACGAATGA

Translation:

MGCQQHAWPAHAPERVEAEVNYIRDSGERPVAYTYPAPAGTPQRSALLQPTRVAIRNARLLAQPASLEREGF
QLVREASAVGDFEDEAQVRERYYPESIALLRRLTGAAEAVIFDHTLRVDQAGREERGLREPVRYVHNDQTLR
SAPRRVRDHLPAERAERRLAGRFQIVNLWRPFGHPAQRAPLALLDARSLAFDDLVASDLVYRDKVGETYSVK
PNPEHRWYYYPHLLPEEALLLKIYDSREDAQARLGAHTAFDDPCTPADAPPRQSIELRCLLFFDE*

AnnotationID:2732 GeneID:2724

AnnotatorUID: diggins

Modification Date/Time: 2005-03-03 07:07:05

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA2095

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:5451

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:22595

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:2724

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

4453 PA2095_tr translation of PA2095 281 98.93 99.99 0 1464.0

129138 gb|AAG05483.1|AE004637_3 (AE004637) hypothetical protein PA2095 [Pseudomonas aeruginosa PAO1] 281 98.93 99.99 0 1464.0

129139 dbj|BAC51714.1| (AP005958) bll6449 [Bradyrhizobium japonicum USDA 110] 290 47.24 62.41 18 661.0

GC ORFID: `45726`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2095`	Glimmer Score:
Start: `1624158`	Stop: `1623313`
Length: `846`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2095 translation of PA2095`	Homolog Bit Score `568.0`
Other Homologs: `t_PA2095 (ORF: GLIMMER)`
GC ORF Sequence
ATGGGTTGCCAGCAACACGCATGGCCGGCGCACGCGCCTGAGCGGGTCGAGGCCGAGGTCAACTATATCCGC GACAGCGGCGAGCGACCCGTCGCCTACACCTATCCGGCCCCCGCCGGGACGCCGCAGCGCAGCGCGCTGTTG CAGCCGACCCGGGTGGCGATCCGCAATGCGCGTCTGCTGGCGCAACCGGCCAGCCTGGAGCGCGAGGGTTTC CAACTGGTGCGCGAGGCGAGCGCGGTGGGCGATTTCGAGGATGAAGCCCAGGTTCGTGAACGCTACTACCCG GAAAGCATCGCCCTGCTCCGCCGCCTGACCGGCGCCGCCGAGGCGGTGATCTTCGACCACACGCTGCGCGTC GACCAAGCCGGGCGCGAAGAACGCGGCCTGCGCGAACCGGTGCGCTACGTGCACAACGACCAGACCCTGCGC TCGGCGCCGCGCCGGGTCCGCGACCACCTGCCGGCGGAACGCGCCGAACGGCGCCTGGCCGGACGCTTCCAG ATCGTCAACCTGTGGCGTCCGTTCGGCCACCCGGCGCAGCGCGCGCCGCTGGCGTTGCTGGACGCCCGCAGC CTGGCGTTCGACGACCTGGTGGCCAGTGACCTGGTGTACCGCGACAAGGTGGGCGAAACCTACTCGGTCAAG CCCAACCCGGAGCACCGCTGGTACTACTACCCGCACCTGCTGCCGGAGGAAGCGCTGCTGCTGAAGATCTAC GATTCGCGGGAGGACGCGCAGGCCCGCCTCGGCGCGCACACCGCCTTCGACGATCCCTGCACCCCGGCCGAT GCGCCGCCGCGGCAGAGTATCGAACTGCGTTGCCTGCTGTTCTTCGACGAATGA