ViewGene
Locus Name:
GeneID:
Location:

GeneID:2723
TrivialName: PA14_47510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47510
PAO1 Ortholog Locus:PA1291
Sequence Length:840
Protein Length:279
Start: 4232484
Stop: 4231645
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04680.1|AE004558_9 (AE004558) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 276/279 (98%), Positives = 277/279 (99%)
Sequence:
ATGAGTACCGCAGTGGAGATCGCCTGCCGTGACGGTGTGCGCCTGGCCGGCGACCACTTCCCGGCCGTCGGC
GATGCGCAGGGGAGCATCGTGGTGGCCTGCGCGCTCGGCGTCAGGCGCGCCTTCTACCAGCGCTTCGCCGTC
CTGGCCGCGGCTTCCGGCTACGAGGTGCTGTTGTTCAGCTACCGCGGCAGCGAAGGCGACGACCCTGCCGTG
GCTAGCTATCGCCTGGCCGACTGGGGACGCGAGGACATCGATGCGGCGCTGGCCTGGTGCCGAGCGCGCGCG
CCGGAGCTACCGCGCTATTTCGTCGGCCACAGCATCGGCGCGCAGTTGCTCGGTCTGGCTGGTCAGGCCAGC
GGATTGAGCGGCGCCGCGTTCGTCGCCGGTTCGTTTCCGTACTGGAGGCGCTGGCGAGGCAGGCAGCGCTGG
CAGATGTTCGGCCTGTTCTGCGTGGCGGTGCCGGTACTGACCGGACTGCTCCGACGCTTTCCCAGTCGTTTC
TTCGGCCTCGGCAGCCTGGATATGCCGAGTCATTTCATGCGCGACTGGGCGCGCTGGGTGCGGCAGCCGGAC
TACCTCCTGGCACCGCGCTTCGGATTGCAGCGGCAGGGTTACGAGGCGCTGGACATCCCCGTCGCCAGCTTC
CTGTTCGAGGACGACGACTACGTGCCCTGGGCTGCGGCGGAAAAGCTTCACCAGGTCTATGCCGCGGCGCAC
CTGGAGTTGCGTCGCAAGGGACGGGCCGAGGGAGCGGTCGGGCATTTCGGGCTGTTCCGCAACGAGGCGTTG
CAGAAGGAGTTGCTCGACTACTTCAGGAAGCTGCCCGACGCGGCGTAA
Translation:
MSTAVEIACRDGVRLAGDHFPAVGDAQGSIVVACALGVRRAFYQRFAVLAAASGYEVLLFSYRGSEGDDPAV
ASYRLADWGREDIDAALAWCRARAPELPRYFVGHSIGAQLLGLAGQASGLSGAAFVAGSFPYWRRWRGRQRW
QMFGLFCVAVPVLTGLLRRFPSRFFGLGSLDMPSHFMRDWARWVRQPDYLLAPRFGLQRQGYEALDIPVASF
LFEDDDYVPWAAAEKLHQVYAAAHLELRRKGRAEGAVGHFGLFRNEALQKELLDYFRKLPDAA*
AnnotationID:2731GeneID:2723
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 20:08:04
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA1291
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4757
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4757, COG4757, Predicted alpha/beta hydrolase
CD-Length = 281 residues,  99.6% aligned
Score =  307 bits (787), Expect = 1e-84
Identities = 123/282 (43%), Positives = 144/282 (51%), Gaps = 11/282 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5449




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22593




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37478




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2723_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2723
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4452
                           PA1291_tr
                           translation of PA1291
                           279
                           98.92
                           99.28
                           0
                           1464.0
     

     
     
129137
                           gb|AAG04680.1|AE004558_9
                           (AE004558) hypothetical protein PA1291 [Pseudomonas aeruginosa PAO1]
                           279
                           98.92
                           99.28
                           0
                           1464.0
     

     






      

          
GC ORFID: 45725How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1291Glimmer Score: 

          
Start: 721425Stop: 722264

          
Length: 840


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1291 translation of PA1291Homolog Bit Score 568.0

          
Other Homologs:  t_PA1291 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTACCGCAGTGGAGATCGCCTGCCGTGACGGTGTGCGCCTGGCCGGCGACCACTTCCCGGCCGTCGGC 
GATGCGCAGGGGAGCATCGTGGTGGCCTGCGCGCTCGGCGTCAGGCGCGCCTTCTACCAGCGCTTCGCCGTC 
CTGGCCGCGGCTTCCGGCTACGAGGTGCTGTTGTTCAGCTACCGCGGCAGCGAAGGCGACGACCCTGCCGTG 
GCTAGCTATCGCCTGGCCGACTGGGGACGCGAGGACATCGATGCGGCGCTGGCCTGGTGCCGAGCGCGCGCG 
CCGGAGCTACCGCGCTATTTCGTCGGCCACAGCATCGGCGCGCAGTTGCTCGGTCTGGCTGGTCAGGCCAGC 
GGATTGAGCGGCGCCGCGTTCGTCGCCGGTTCGTTTCCGTACTGGAGGCGCTGGCGAGGCAGGCAGCGCTGG 
CAGATGTTCGGCCTGTTCTGCGTGGCGGTGCCGGTACTGACCGGACTGCTCCGACGCTTTCCCAGTCGTTTC 
TTCGGCCTCGGCAGCCTGGATATGCCGAGTCATTTCATGCGCGACTGGGCGCGCTGGGTGCGGCAGCCGGAC 
TACCTCCTGGCACCGCGCTTCGGATTGCAGCGGCAGGGTTACGAGGCGCTGGACATCCCCGTCGCCAGCTTC 
CTGTTCGAGGACGACGACTACGTGCCCTGGGCTGCGGCGGAAAAGCTTCACCAGGTCTATGCCGCGGCGCAC 
CTGGAGTTGCGTCGCAAGGGACGGGCCGAGGGAGCGGTCGGGCATTTCGGGCTGTTCCGCAACGAGGCGTTG 
CAGAAGGAGTTGCTCGACTACTTCAGGAAGCTGCCCGACGCGGCGTAA