ViewGene

Locus Name:
GeneID:
Location:

GeneID:2722
TrivialName: PA14_28420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28420
PAO1 Ortholog Locus:PA2758
Sequence Length:888
Protein Length:295
Start: 2455678
Stop: 2454791
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06146.1|AE004703_12 (AE004703) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 294/295 (99%), Positives = 294/295 (99%)
Sequence:
ATGAACTTTTCCAGCGATACCATCGAGCTGTTCCTCGCCGTCCTCGACCGCGGCTCCTTTTCCGGCGCCGCC
CGTGCCTTGGGTCGAGTGCCTTCGGCGGTGAGCATGGGCATCGCCAACCTCGAGGCGGAGCTGGGTTTCGCC
CTTTTCGAGCGAACCCACCGCGAAGCCCGTCCTACGGCGCTGGCCAGGGCCCTGGCACCGCAAGCGCGGATG
ATCGCCGAGCAGCTCGCCCAGTTGCAGGTGCATGCGCTGGAACTCTCCCAGGGATTGGAAAGCCGCCTGTCG
CTCGGCGTGGTTGCGGACATCGACAGCGGGCGGCTGTTCGGTGCCCTCCGCACCCTTTCCGAGCGCTACCCG
CTGCTCGATGTCGAGGTGCTCAGCGCGGCGCAGGACGATGCCCTCGCCCTGCTCCATGGCGGCCGCATCAGC
CTGTGCTTCGGATTCGCCGGCATCAGCGTGAACCCGCAGGAGCGCTTCCAGTATGTCGGCGCGGAATCGCTG
GTCGCGACCATCTCGCCGCACCATCCCGCCCTGCAGAAGCCGGGGCAGGCGCTGTACCTGGAAGAGCTGGTG
AACGTGCGGCAGATCCTGGTGGCCAGTTGCGACCTGCCGTTGGCCGACACCCGTCCGCTGATTGCCGGCGCC
TGCTGGCGCACCGACAGCCTGGGCACGGCGCTGGAAATGGTCGAGGCGGGGATCGGCTGGGGCAATTTCCCG
TTGTCCCGGGTCGCCCCGCTGCTGGCAACGGGAAGGCTGGTACGCCTGGACTTCAGGAATACCAAGAACGAG
CTGAAACTGCCTGTCCACGCTATCTGGCTGAAAAACCAGCCATTGCGCAAGGCCGCCCAGGAACTGGTTGGC
ATGCTGGCCACCCGTCCCGATTGA
Translation:
MNFSSDTIELFLAVLDRGSFSGAARALGRVPSAVSMGIANLEAELGFALFERTHREARPTALARALAPQARM
IAEQLAQLQVHALELSQGLESRLSLGVVADIDSGRLFGALRTLSERYPLLDVEVLSAAQDDALALLHGGRIS
LCFGFAGISVNPQERFQYVGAESLVATISPHHPALQKPGQALYLEELVNVRQILVASCDLPLADTRPLIAGA
CWRTDSLGTALEMVEAGIGWGNFPLSRVAPLLATGRLVRLDFRNTKNELKLPVHAIWLKNQPLRKAAQELVG
MLATRPD*
AnnotationID:2730GeneID:2722
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 13:01:36
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA2758
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67863.1|AE016418_3 (AE016782) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 292

 Score =  360 bits (923), Expect = 7e-99
 Identities = 191/291 (65%), Positives = 225/291 (77%), Gaps = 1/291 (0%)

Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  95.3% aligned
Score =  105 bits (262), Expect = 7e-24
Identities = 77/287 (26%), Positives = 114/287 (39%), Gaps = 7/287 (2%)
Genomic Context:
Comment:
ReferenceID:5447
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22591
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36280
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2722_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2722

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4451 PA2758_tr translation of PA2758 295 99.66 99.66 0 1467.0
129134 gb|AAG06146.1|AE004703_12 (AE004703) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 295 99.66 99.66 0 1467.0
129135 gb|AAN67863.1|AE016418_3 (AE016782) transcriptional regulator, LysR family [Pseudomonas putida KT2440] 295 64.74 76.27 3 922.0
129136 gb|AAN69738.1|AE016610_4 (AE016789) transcriptional regulator, LysR family [Pseudomonas putida KT2440] 301 43.52 59.46 6 585.0
GC ORFID: 45724How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2758Glimmer Score:
Start: 2498248Stop: 2499135
Length: 888
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2758 translation of PA2758Homolog Bit Score 569.0
Other Homologs: t_PA2758 (ORF: GLIMMER)
GC ORF Sequence
ATGAACTTTTCCAGCGATACCATCGAGCTGTTCCTCGCCGTCCTCGACCGCGGCTCCTTTTCCGGCGCCGCC
CGTGCCTTGGGTCGAGTGCCTTCGGCGGTGAGCATGGGCATCGCCAACCTCGAGGCGGAGCTGGGTTTCGCC
CTTTTCGAGCGAACCCACCGCGAAGCCCGTCCTACGGCGCTGGCCAGGGCCCTGGCACCGCAAGCGCGGATG
ATCGCCGAGCAGCTCGCCCAGTTGCAGGTGCATGCGCTGGAACTCTCCCAGGGATTGGAAAGCCGCCTGTCG
CTCGGCGTGGTTGCGGACATCGACAGCGGGCGGCTGTTCGGTGCCCTCCGCACCCTTTCCGAGCGCTACCCG
CTGCTCGATGTCGAGGTGCTCAGCGCGGCGCAGGACGATGCCCTCGCCCTGCTCCATGGCGGCCGCATCAGC
CTGTGCTTCGGATTCGCCGGCATCAGCGTGAACCCGCAGGAGCGCTTCCAGTATGTCGGCGCGGAATCGCTG
GTCGCGACCATCTCGCCGCACCATCCCGCCCTGCAGAAGCCGGGGCAGGCGCTGTACCTGGAAGAGCTGGTG
AACGTGCGGCAGATCCTGGTGGCCAGTTGCGACCTGCCGTTGGCCGACACCCGTCCGCTGATTGCCGGCGCC
TGCTGGCGCACCGACAGCCTGGGCACGGCGCTGGAAATGGTCGAGGCGGGGATCGGCTGGGGCAATTTCCCG
TTGTCCCGGGTCGCCCCGCTGCTGGCAACGGGAAGGCTGGTACGCCTGGACTTCAGGAATACCAAGAACGAG
CTGAAACTGCCTGTCCACGCTATCTGGCTGAAAAACCAGCCATTGCGCAAGGCCGCCCAGGAACTGGTTGGC
ATGCTGGCCACCCGTCCCGATTGA