ViewGene

Locus Name:
GeneID:
Location:

GeneID:2721
TrivialName: PA14_32200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32200
PAO1 Ortholog Locus:PA2510
Sequence Length:873
Protein Length:290
Start: 2800106
Stop: 2799234
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05898.1|AE004678_4 (AE004678) transcriptional regulator CatR [Pseudomonas aeruginosa PAO1]
Identities = 290/290 (100%), Positives = 290/290 (100%)
Sequence:
ATGGAGCTTCGTCACCTGCGCTACTTCCAGGCGCTGGCCCGGACCCTCAACTTCACCCGCGCCGCCGAGCAA
CTGCACATCGCCCAGCCACCGCTGAGCCGGCAGATCCAGCAACTCGAGGAAATGCTCGGGGTGGCCCTGCTG
GAGCGCGGCCGGCCGCTGCGCCTGACCGAAGCCGGGCGCTTCTTCCACGAACAGAGCGCGACGCTCCTGGAC
CAACTGGAGAGCATCTGCGACAGCACCCGGCGGATCGGCCAGGGCCAGCGCCAGTGGTTCGGCATCGGCTTC
GTGCCCTCGGCGCTGTATGGCGTGCTGCCGGAGCTGATCCGCCACCTGCGCGGCGACCCGGAGCTGGAGCTG
GGCCTGCTGGAGATGACCACCCTGCAACAGGTCGAGGCGCTGAAGAGCGGGCGCATCGACATCGGTTTCGGA
CGCATCCGCATCGACGACCCGGCGATCCGCCAGAGCGTGCTCAGCGAAGAGCCGCTGGTCGCCGCCCTGCCC
GCCGGGCACCCGTTGCTCGGCCAGCCGCTGAGCCTGGAGCGCCTGTCGCGCGAGCCGTTCGTGCTCTACCCC
GGCCAGCCGCGGCCGAGCTACGCCGACCATGTGCTGGCGCTGTTCGCCACCCACGGCCTGAGCCTGCGCGTG
ACGCAATGGGCCAACGAGATGCAGACCGCCATCGGCCTGGTCGCCGCCGGACTCGGCGCGACCCTGGTGCCG
GCCTCGGTGCAGTTGCAGCACCGCGACGACGTCGCCTACCAGGCCCTGGCCGACGCCTCCCTGACCTCGCCG
ATCATCGTCAGCCGGCGCCAGGGCGACGGCTCCCCGCACCTGCGGCGCTGCCTGGCGCTGATCGGCCGCGAG
GACGCCTGA
Translation:
MELRHLRYFQALARTLNFTRAAEQLHIAQPPLSRQIQQLEEMLGVALLERGRPLRLTEAGRFFHEQSATLLD
QLESICDSTRRIGQGQRQWFGIGFVPSALYGVLPELIRHLRGDPELELGLLEMTTLQQVEALKSGRIDIGFG
RIRIDDPAIRQSVLSEEPLVAALPAGHPLLGQPLSLERLSREPFVLYPGQPRPSYADHVLALFATHGLSLRV
TQWANEMQTAIGLVAAGLGATLVPASVQLQHRDDVAYQALADASLTSPIIVSRRQGDGSPHLRRCLALIGRE
DA*
AnnotationID:2729GeneID:2721
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 17:05:57
Gene Name:catR
Confidence Code:2
GeneProduct: transcriptional regulator CatR
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAK52295.1| (AY026914) putative transcriptional regulatory protein CatR
           [Pseudomonas putida]
          Length = 290

 Score =  569 bits (1467), Expect = e-162
 Identities = 290/290 (100%), Positives = 290/290 (100%)

>dbj|BAA75209.1| (AB009373) regulator of cat2 gene cluster [Frateuria sp. ANA-18]
          Length = 295

 Score =  268 bits (686), Expect = 2e-71
 Identities = 147/280 (52%), Positives = 189/280 (67%), Gaps = 5/280 (1%)

>dbj|BAC16778.1| (AB035483) transcriptional activator [Burkholderia sp. TH2]
          Length = 307

 Score =  263 bits (671), Expect = 1e-69
 Identities = 152/291 (52%), Positives = 198/291 (68%), Gaps = 5/291 (1%)
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  97.6% aligned
Score =  114 bits (285), Expect = 2e-26
Identities = 92/295 (31%), Positives = 133/295 (45%), Gaps = 12/295 (4%)
Genomic Context:
Comment:
ReferenceID:5445
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22589
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33059
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2721_cdd.html
URL:
ReferenceID:34506
Author/Investigator(s): Liao X, Charlebois I, Ouellet C, Morency MJ, Dewar K, Lightfoot J, Foster J, Siehnel R, Schweizer H, Lam JS, Hancock RE, Levesque RC.
Title: Physical mapping of 32 genetic markers on the Pseudomonas aeruginosa PAO1 chromosome.
PubMed: 8581173
MedLine:
Source:
Microbiology. 1996 Jan;142 ( Pt 1):79-86.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8581173
ReferenceID:34507
Author/Investigator(s): Rothmel RK, Aldrich TL, Houghton JE, Coco WM, Ornston LN, Chakrabarty AM.
Title: Nucleotide sequencing and characterization of Pseudomonas putida catR: a positive regulator of the catBC operon is a member of the LysR family.
PubMed: 1688844
MedLine:
Source:
J Bacteriol. 1990 Feb;172(2):922-31.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1688844
Homologs By Global Alignment
Gene ID:2721

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4449 PA2510_tr translation of PA2510 290 99.99 99.99 0 1467.0
129105 gb|AAG05898.1|AE004678_4 (AE004678) transcriptional regulator CatR [Pseudomonas aeruginosa PAO1] 290 99.99 99.99 0 1467.0
129106 gb|AAK52295.1| (AY026914) putative transcriptional regulatory protein CatR [Pseudomonas putida] 290 99.99 99.99 0 1467.0
129108 gb|AAN69313.1|AE016568_8 (AE016788) transcriptional activator CatR [Pseudomonas putida KT2440] 290 73.79 82.75 0 1090.0
129107 dbj|BAB32455.1| (AB047272) positive regulator of cat operon CatR [Pseudomonas sp. CA10] 295 73.55 82.71 7 1106.0
GC ORFID: 45723How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2510Glimmer Score:
Start: 2153818Stop: 2154690
Length: 873
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2510 translation of PA2510Homolog Bit Score 569.0
Other Homologs: t_PA5029 (ORF: BLASTX 184.0), t_PA2510 (ORF: GLIMMER)
GC ORF Sequence
ATGGAGCTTCGTCACCTGCGCTACTTCCAGGCGCTGGCCCGGACCCTCAACTTCACCCGCGCCGCCGAGCAA
CTGCACATCGCCCAGCCACCGCTGAGCCGGCAGATCCAGCAACTCGAGGAAATGCTCGGGGTGGCCCTGCTG
GAGCGCGGCCGGCCGCTGCGCCTGACCGAAGCCGGGCGCTTCTTCCACGAACAGAGCGCGACGCTCCTGGAC
CAACTGGAGAGCATCTGCGACAGCACCCGGCGGATCGGCCAGGGCCAGCGCCAGTGGTTCGGCATCGGCTTC
GTGCCCTCGGCGCTGTATGGCGTGCTGCCGGAGCTGATCCGCCACCTGCGCGGCGACCCGGAGCTGGAGCTG
GGCCTGCTGGAGATGACCACCCTGCAACAGGTCGAGGCGCTGAAGAGCGGGCGCATCGACATCGGTTTCGGA
CGCATCCGCATCGACGACCCGGCGATCCGCCAGAGCGTGCTCAGCGAAGAGCCGCTGGTCGCCGCCCTGCCC
GCCGGGCACCCGTTGCTCGGCCAGCCGCTGAGCCTGGAGCGCCTGTCGCGCGAGCCGTTCGTGCTCTACCCC
GGCCAGCCGCGGCCGAGCTACGCCGACCATGTGCTGGCGCTGTTCGCCACCCACGGCCTGAGCCTGCGCGTG
ACGCAATGGGCCAACGAGATGCAGACCGCCATCGGCCTGGTCGCCGCCGGACTCGGCGCGACCCTGGTGCCG
GCCTCGGTGCAGTTGCAGCACCGCGACGACGTCGCCTACCAGGCCCTGGCCGACGCCTCCCTGACCTCGCCG
ATCATCGTCAGCCGGCGCCAGGGCGACGGCTCCCCGCACCTGCGGCGCTGCCTGGCGCTGATCGGCCGCGAG
GACGCCTGA