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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG05898.1|AE004678_4 (AE004678) transcriptional regulator CatR [Pseudomonas aeruginosa PAO1]
Identities = 290/290 (100%), Positives = 290/290 (100%)
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Sequence:
ATGGAGCTTCGTCACCTGCGCTACTTCCAGGCGCTGGCCCGGACCCTCAACTTCACCCGCGCCGCCGAGCAA
CTGCACATCGCCCAGCCACCGCTGAGCCGGCAGATCCAGCAACTCGAGGAAATGCTCGGGGTGGCCCTGCTG
GAGCGCGGCCGGCCGCTGCGCCTGACCGAAGCCGGGCGCTTCTTCCACGAACAGAGCGCGACGCTCCTGGAC
CAACTGGAGAGCATCTGCGACAGCACCCGGCGGATCGGCCAGGGCCAGCGCCAGTGGTTCGGCATCGGCTTC
GTGCCCTCGGCGCTGTATGGCGTGCTGCCGGAGCTGATCCGCCACCTGCGCGGCGACCCGGAGCTGGAGCTG
GGCCTGCTGGAGATGACCACCCTGCAACAGGTCGAGGCGCTGAAGAGCGGGCGCATCGACATCGGTTTCGGA
CGCATCCGCATCGACGACCCGGCGATCCGCCAGAGCGTGCTCAGCGAAGAGCCGCTGGTCGCCGCCCTGCCC
GCCGGGCACCCGTTGCTCGGCCAGCCGCTGAGCCTGGAGCGCCTGTCGCGCGAGCCGTTCGTGCTCTACCCC
GGCCAGCCGCGGCCGAGCTACGCCGACCATGTGCTGGCGCTGTTCGCCACCCACGGCCTGAGCCTGCGCGTG
ACGCAATGGGCCAACGAGATGCAGACCGCCATCGGCCTGGTCGCCGCCGGACTCGGCGCGACCCTGGTGCCG
GCCTCGGTGCAGTTGCAGCACCGCGACGACGTCGCCTACCAGGCCCTGGCCGACGCCTCCCTGACCTCGCCG
ATCATCGTCAGCCGGCGCCAGGGCGACGGCTCCCCGCACCTGCGGCGCTGCCTGGCGCTGATCGGCCGCGAG
GACGCCTGA |
Translation:
MELRHLRYFQALARTLNFTRAAEQLHIAQPPLSRQIQQLEEMLGVALLERGRPLRLTEAGRFFHEQSATLLD
QLESICDSTRRIGQGQRQWFGIGFVPSALYGVLPELIRHLRGDPELELGLLEMTTLQQVEALKSGRIDIGFG
RIRIDDPAIRQSVLSEEPLVAALPAGHPLLGQPLSLERLSREPFVLYPGQPRPSYADHVLALFATHGLSLRV
TQWANEMQTAIGLVAAGLGATLVPASVQLQHRDDVAYQALADASLTSPIIVSRRQGDGSPHLRRCLALIGRE
DA* |
AnnotationID:2729 | GeneID:2721 |
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Modification Date/Time: |
2005-03-06 17:05:57 |
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GeneProduct: | transcriptional regulator CatR |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (25) Transcriptional regulators |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAK52295.1| (AY026914) putative transcriptional regulatory protein CatR
[Pseudomonas putida]
Length = 290
Score = 569 bits (1467), Expect = e-162
Identities = 290/290 (100%), Positives = 290/290 (100%)
>dbj|BAA75209.1| (AB009373) regulator of cat2 gene cluster [Frateuria sp. ANA-18]
Length = 295
Score = 268 bits (686), Expect = 2e-71
Identities = 147/280 (52%), Positives = 189/280 (67%), Gaps = 5/280 (1%)
>dbj|BAC16778.1| (AB035483) transcriptional activator [Burkholderia sp. TH2]
Length = 307
Score = 263 bits (671), Expect = 1e-69
Identities = 152/291 (52%), Positives = 198/291 (68%), Gaps = 5/291 (1%) |
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Structural Features: | COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues, 97.6% aligned
Score = 114 bits (285), Expect = 2e-26
Identities = 92/295 (31%), Positives = 133/295 (45%), Gaps = 12/295 (4%) |
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ReferenceID:34506 |
Author/Investigator(s): |
Liao X, Charlebois I, Ouellet C, Morency MJ, Dewar K, Lightfoot J, Foster J, Siehnel R, Schweizer H, Lam JS, Hancock RE, Levesque RC. |
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Title: |
Physical mapping of 32 genetic markers on the Pseudomonas aeruginosa PAO1 chromosome. |
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Source: | Microbiology. 1996 Jan;142 ( Pt 1):79-86. |
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