ViewGene

Locus Name:
GeneID:
Location:

GeneID:2720
TrivialName: PA14_43170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43170
PAO1 Ortholog Locus:PA1650
Sequence Length:894
Protein Length:297
Start: 3846420
Stop: 3845527
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05039.1|AE004593_1 (AE004593) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 295/297 (99%), Positives = 296/297 (99%)
Sequence:
ATGACCGCCGATCCCATCCTGACCCTGTTCCTCCCCATCGCCCTGGGCATCATCATGCTCGGTCTCGGACTG
TCCCTGACCCCGGCCGACTTCCTCCGCGTGGTGCGCTACCCGAAGCCGGTGCTGGTCGGCCTGGTGTGCCAG
ATCGTCCTGCTGCCCCTGGCCTGTTTCCTGATCGTCCAGGGCTTCGCCCTCGAGGCGGCCCTGGCGGTCGGC
ATGATGTTGCTGGCGGCCTCGCCCGGCGGCACCACCGCCAACCTCTACAGCCACCTGGCGCATGGCGACGTG
GCACTGAACATCACCCTGACCGCGGTGAACTCGGTGATCGCCATCCTCACCATGCCGCTGATCGTCAATCTG
TCGCTGCAATACTTCATGGGCGACGGGCAGGCGATTCCCCTGCAGTTCGGCAAGGTCATGCAGGTGTTCGTC
ATCGTCCTCGGCCCGGTGGCCATCGGCATGCTGGTGCGCAACCGCCTGCCGGCCGTGGCGGATCGGCTGCAG
AAGCCGGTGAAGATCCTTTCCGCGCTGCTGTTGCTGGTGATCATCCTGCTGGCGCTGGCCAAGGACTGGCAG
ACCTTCGTCACCTACGCGCCGGTGGTCGGGCTGGCCGCGCTGGCCTTCAACCTGCTGAGCCTGGCGGTGGGC
TACTGGGTACCGCGCCTGCTGCGCCTGCCGAAGGCCCAGGCGGTGGCCATCGGCATGGAGATCGGCATCCAC
AACGGCACCCTGGCGATCGCCCTGGCGCTGAGTCCGAGCCTGCTGAACAACAGCACCATGGCGATTCCGCCG
GCGATCTACGGGGTGTTGATGTTCTTCACCGCGGCGGCCTTCGGCTGGTGGGTCAGCCGTGGCCACCAGGCC
GCGCCGGCGCCCGTGACGGCGCCGGACTGA
Translation:
MTADPILTLFLPIALGIIMLGLGLSLTPADFLRVVRYPKPVLVGLVCQIVLLPLACFLIVQGFALEAALAVG
MMLLAASPGGTTANLYSHLAHGDVALNITLTAVNSVIAILTMPLIVNLSLQYFMGDGQAIPLQFGKVMQVFV
IVLGPVAIGMLVRNRLPAVADRLQKPVKILSALLLLVIILLALAKDWQTFVTYAPVVGLAALAFNLLSLAVG
YWVPRLLRLPKAQAVAIGMEIGIHNGTLAIALALSPSLLNNSTMAIPPAIYGVLMFFTAAAFGWWVSRGHQA
APAPVTAPD*
AnnotationID:2728GeneID:2720
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 17:05:54
Gene Name:
Confidence Code:3
GeneProduct:putative transporter, bile acid/Na+ symporter family
Cell Localization:()
Synonyms:PA1650
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0385,pfam01758
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68854.1|AE016517_14 (AE016786) transporter, bile acid/Na+ symporter family [Pseudomonas
           putida KT2440]
          Length = 297

 Score =  451 bits (1159), Expect = e-126
 Identities = 227/289 (78%), Positives = 255/289 (88%)

>gb|AAN48539.1|AE011314_2 (AE011314) Na(+) dependent transporter,Sodium Bile acid symporter
           family [Leptospira interrogans serovar lai str. 56601]
          Length = 314

 Score =  255 bits (651), Expect = 2e-67
 Identities = 130/285 (45%), Positives = 199/285 (69%), Gaps = 3/285 (1%)

Structural Features:
COG0385, COG0385, Predicted Na+-dependent transporter
CD-Length = 319 residues,  89.7% aligned
Score =  186 bits (475), Expect = 2e-48
Identities = 101/294 (34%), Positives = 161/294 (54%), Gaps = 10/294 (3%)

pfam01758, SBF, Sodium Bile acid symporter family. 
CD-Length = 186 residues,  95.2% aligned
Score = 78.3 bits (193), Expect = 9e-16
Identities = 53/179 (29%), Positives = 96/179 (53%), Gaps = 4/179 (2%)
Genomic Context:
Comment:
ReferenceID:5443
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22587
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37224
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2720_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2720

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4448 PA1650_tr translation of PA1650 297 99.32 99.66 0 1466.0
129100 gb|AAG05039.1|AE004593_1 (AE004593) probable transporter [Pseudomonas aeruginosa PAO1] 297 99.32 99.66 0 1466.0
129101 gb|AAN68854.1|AE016517_14 (AE016786) transporter, bile acid/Na+ symporter family [Pseudomonas putida KT2440] 298 76.84 86.24 2 1154.0
129103 dbj|BAA18004.1| (D90911) P3 protein [Synechocystis sp. PCC 6803] 302 42.38 63.90 15 575.0
129102 gb|AAN48539.1|AE011314_2 (AE011314) Na(+) dependent transporter,Sodium Bile acid symporter family [Leptospira interrogans serovar lai str. 56601] 324 40.12 61.41 37 653.0
GC ORFID: 45722How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1650Glimmer Score:
Start: 1107489Stop: 1108382
Length: 894
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1650 translation of PA1650Homolog Bit Score 569.0
Other Homologs: t_PA1650 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGCCGATCCCATCCTGACCCTGTTCCTCCCCATCGCCCTGGGCATCATCATGCTCGGTCTCGGACTG
TCCCTGACCCCGGCCGACTTCCTCCGCGTGGTGCGCTACCCGAAGCCGGTGCTGGTCGGCCTGGTGTGCCAG
ATCGTCCTGCTGCCCCTGGCCTGTTTCCTGATCGTCCAGGGCTTCGCCCTCGAGGCGGCCCTGGCGGTCGGC
ATGATGTTGCTGGCGGCCTCGCCCGGCGGCACCACCGCCAACCTCTACAGCCACCTGGCGCATGGCGACGTG
GCACTGAACATCACCCTGACCGCGGTGAACTCGGTGATCGCCATCCTCACCATGCCGCTGATCGTCAATCTG
TCGCTGCAATACTTCATGGGCGACGGGCAGGCGATTCCCCTGCAGTTCGGCAAGGTCATGCAGGTGTTCGTC
ATCGTCCTCGGCCCGGTGGCCATCGGCATGCTGGTGCGCAACCGCCTGCCGGCCGTGGCGGATCGGCTGCAG
AAGCCGGTGAAGATCCTTTCCGCGCTGCTGTTGCTGGTGATCATCCTGCTGGCGCTGGCCAAGGACTGGCAG
ACCTTCGTCACCTACGCGCCGGTGGTCGGGCTGGCCGCGCTGGCCTTCAACCTGCTGAGCCTGGCGGTGGGC
TACTGGGTACCGCGCCTGCTGCGCCTGCCGAAGGCCCAGGCGGTGGCCATCGGCATGGAGATCGGCATCCAC
AACGGCACCCTGGCGATCGCCCTGGCGCTGAGTCCGAGCCTGCTGAACAACAGCACCATGGCGATTCCGCCG
GCGATCTACGGGGTGTTGATGTTCTTCACCGCGGCGGCCTTCGGCTGGTGGGTCAGCCGTGGCCACCAGGCC
GCGCCGGCGCCCGTGACGGCGCCGGACTGA