ViewGene
Locus Name:
GeneID:
Location:

GeneID:272
TrivialName: PA14_50840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50840
PAO1 Ortholog Locus:PA1045
Sequence Length:2145
Protein Length:714
Start: 4520479
Stop: 4518335
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04434.1|AE004536_13 (AE004536) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 713/714 (99%), Positives = 713/714 (99%)
Sequence:
ATGCTCAGCGCCGAACTCAAGTCCCAGATCCAGGGTGCCTACACCCGCTTTCTCGAAGCCAAGGAGCTGAAG
CCTCGCTATGGCCAGCGCCTGATGATCGCCGAAGTGGCCAAGGCCCTCGGCGCGATCAAGGAGGACGAGGAG
GGGCACCGCGAGGGCGAGCCGGCGGTGGTCGCGGTGGAGGCCGGAACCGGTACCGGCAAGACCGTGGCCTAC
AGCCTGGCGGCGATCGCCTGCGCCAAGGCCAGTGGCAAGCGCCTGGTGATAGCCACCGCGACCGTCGCCCTG
CAGGAGCAGATCGTCCACAAGGATCTTCCCGACCTGCTGCGCAACAGCGGGCTGGCCTTCAGCTTCGCCCTG
GCCAAGGGCCGCGGGCGCTACCTGTGCCTGTCCAAGCTCGACGTGCTGCTGCAGGAAGGCCAGGCGCAAAGC
GCGACGGCGCAACTGTTCGCCGACGACGGTTTCAACATCGACGTCGACGAGACCAGCAGCAAGCTGTTCAAC
CAGATGATCGAACGCCTGGCCGGCAACCGCTGGGACGGCGACCGCGACAGCTGGCCGGAGGCGATCGACGAC
GCGCATTGGGCGCAGCTCACCACCGATCACAGCCAGTGCACCAACCGACATTGCCCGAACTTCCAGCAGTGC
GCCTTCTACAAGGCGCGCGAAGGGATGACCAAGGTCGATGTGATCGTCACCAACCACGACCTGGTCCTGGCT
GACCTGGCCCTGGGCGGCGGCGCCATCCTGCCCGATCCGCGCGAGACTCTCTACGTGTTCGACGAGGGCCAT
CACCTGCCGGACAAGGCGATTGGCCATTTCGCCCATTTCACCCGCCTGCGCGCTACCGCCGACTGGCTGGAG
CAGATCGCCAAGAACCTCACCAAGCTGCTCGCCCAGCACCCGCTGCCGGGTGACCTCGGCCGCCTGATCGAA
CAGGTGCCGGAGCTGGCCCGGGAGATCAAGACCCAGCAGCAGTTCATGTTCACCGCCTGCGAAGAGATCGGC
GATTTCCGCGCCGGCGAGGACATGGAAGGTCGCGAGCGGCCGCGTCACCGTTTCGTCGGCGGGGTGGTCCCC
GAGCATATCCGCGAGATGGGCATCGAGCTGAAGAAAGGCTTCTCCAAGCTGACCGACCTGTTCACCCGCCTC
ACCGATATCCTCAAGGAGGCGATGGACGGCGAAGGCGCCGGCGGCATCGCCAGCCACCAGGCGGAGGAGTGG
TACCCGCTGTTCGGTAGTCTTTTGGCGCGCGCCCAGGGCAACTGGGAACTGTGGACCGCCTTCACCTGCGAG
GACCCGCAGGACAGCCCGCCGATGGCGCGCTGGCTGACCCTCGCCGAGAGCGGCAGCTTCTACGACATCGAA
GCCAACGCCAGCCCGATCCTCGCCGCCGAGACCCTGCGCCGCAACCTGTGGAACGTCGCCTATGGCGTGCTG
GTGACCTCGGCGACCCTGACCGCGTTGGGCACCTTCGACCGCTATCGCATGCGCGCCGGCCTGCCGCGCAAC
GCGGTCACCGCGGTGGTGCCGAGCCCCTTCCATCATGCCGAGGCCGGGGTATTGCGGGTCCCCGACCTCAAG
GCGGATCCGCGCAACGCCGCCGAGCACACCGCGGCGATCATTCGCGAGCTGCCGGAACTGGTGAAGGGCGCG
CGCGGCAGCCTGGTGCTGTTCTCCTCGCGCAAGCAGATGCAGGAGGTCTTCGACGGTCTCGACCGCGACTGG
CGCAAGCGGGTGTTCATCCAGGGCAACCTGTCCAAGCAGGAAACCCTGAACAAGCACAAGTCGCGAGTCGAC
GACGGTGAGGACAGCGTGCTCTTCGGCCTCGCCAGCTTCGCCGAAGGCGTGGACCTGCCGGGGGCCTATTGC
GAACACGTGGTGATCGCCAAGATTCCCTTCGCGGTACCCGACGACCCGGTGGAGGCGGCGCTGGCCGAGTGG
ATCGAGGCGCGCGGCGGCAATCCGTTCATGGAGATCGCCGTGCCAGACGCCTCGCTGCGGTTGGTCCAGGCC
TGCGGGCGGCTGCTGCGCACCGAGCAGGACCGCGGCACCATCACCCTGCTGGATCGCCGCGTGGTCACCCAG
CGCTACGGCAAGGCTATCCTCAATGCATTGCCGCCGTTCCGGCGGGAAATCGCCTGA
Translation:
MLSAELKSQIQGAYTRFLEAKELKPRYGQRLMIAEVAKALGAIKEDEEGHREGEPAVVAVEAGTGTGKTVAY
SLAAIACAKASGKRLVIATATVALQEQIVHKDLPDLLRNSGLAFSFALAKGRGRYLCLSKLDVLLQEGQAQS
ATAQLFADDGFNIDVDETSSKLFNQMIERLAGNRWDGDRDSWPEAIDDAHWAQLTTDHSQCTNRHCPNFQQC
AFYKAREGMTKVDVIVTNHDLVLADLALGGGAILPDPRETLYVFDEGHHLPDKAIGHFAHFTRLRATADWLE
QIAKNLTKLLAQHPLPGDLGRLIEQVPELAREIKTQQQFMFTACEEIGDFRAGEDMEGRERPRHRFVGGVVP
EHIREMGIELKKGFSKLTDLFTRLTDILKEAMDGEGAGGIASHQAEEWYPLFGSLLARAQGNWELWTAFTCE
DPQDSPPMARWLTLAESGSFYDIEANASPILAAETLRRNLWNVAYGVLVTSATLTALGTFDRYRMRAGLPRN
AVTAVVPSPFHHAEAGVLRVPDLKADPRNAAEHTAAIIRELPELVKGARGSLVLFSSRKQMQEVFDGLDRDW
RKRVFIQGNLSKQETLNKHKSRVDDGEDSVLFGLASFAEGVDLPGAYCEHVVIAKIPFAVPDDPVEAALAEW
IEARGGNPFMEIAVPDASLRLVQACGRLLRTEQDRGTITLLDRRVVTQRYGKAILNALPPFRREIA*
AnnotationID:282GeneID:272
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 12:12:24
Gene Name:
Confidence Code:3
GeneProduct:Putative DNA helicase
Cell Localization:()
Synonyms:PA1045
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1199
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA 
replication, recombination, and repair]
     CD-Length = 654 residues,  97.6% aligned
     Score =  439 bits (1130), Expect = 5e-124






   
Genomic Context:






   
Comment:


















    ReferenceID:547




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17689




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:272
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
451
                           PA1045_tr
                           translation of PA1045
                           714
                           99.85
                           99.85
                           0
                           3694.0
     

     
     
23906
                           gb|AAG04434.1|AE004536_13
                           (AE004536) hypothetical protein PA1045 [Pseudomonas aeruginosa PAO1]
                           714
                           99.85
                           99.85
                           0
                           3694.0
     

     
     
23907
                           gb|AAO57576.1|
                           (AE016870) ATP-dependent helicase, DinG family [Pseudomonas syringae pv. tomato str. DC3000]
                           714
                           84.87
                           92.99
                           0
                           3231.0
     

     
     
23908
                           gb|AAN66750.1|AE016303_5
                           (AE016778) helicase, putative [Pseudomonas putida KT2440]
                           714
                           84.17
                           92.15
                           0
                           3178.0
     

     
     
23909
                           gb|AAP30024.1|
                           (AY163860) hypothetical protein [Pseudomonas chlororaphis]
                           714
                           46.49
                           51.12
                           328
                           1769.0
     

     






      

          
GC ORFID: 43274How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1045Glimmer Score: 

          
Start: 433429Stop: 435573

          
Length: 2145


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1045 translation of PA1045Homolog Bit Score 1427.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6295 (ORF: BLASTX 1249.0), t_PA1045 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCAGCGCCGAACTCAAGTCCCAGATCCAGGGTGCCTACACCCGCTTTCTCGAAGCCAAGGAGCTGAAG 
CCTCGCTATGGCCAGCGCCTGATGATCGCCGAAGTGGCCAAGGCCCTCGGCGCGATCAAGGAGGACGAGGAG 
GGGCACCGCGAGGGCGAGCCGGCGGTGGTCGCGGTGGAGGCCGGAACCGGTACCGGCAAGACCGTGGCCTAC 
AGCCTGGCGGCGATCGCCTGCGCCAAGGCCAGTGGCAAGCGCCTGGTGATAGCCACCGCGACCGTCGCCCTG 
CAGGAGCAGATCGTCCACAAGGATCTTCCCGACCTGCTGCGCAACAGCGGGCTGGCCTTCAGCTTCGCCCTG 
GCCAAGGGCCGCGGGCGCTACCTGTGCCTGTCCAAGCTCGACGTGCTGCTGCAGGAAGGCCAGGCGCAAAGC 
GCGACGGCGCAACTGTTCGCCGACGACGGTTTCAACATCGACGTCGACGAGACCAGCAGCAAGCTGTTCAAC 
CAGATGATCGAACGCCTGGCCGGCAACCGCTGGGACGGCGACCGCGACAGCTGGCCGGAGGCGATCGACGAC 
GCGCATTGGGCGCAGCTCACCACCGATCACAGCCAGTGCACCAACCGACATTGCCCGAACTTCCAGCAGTGC 
GCCTTCTACAAGGCGCGCGAAGGGATGACCAAGGTCGATGTGATCGTCACCAACCACGACCTGGTCCTGGCT 
GACCTGGCCCTGGGCGGCGGCGCCATCCTGCCCGATCCGCGCGAGACTCTCTACGTGTTCGACGAGGGCCAT 
CACCTGCCGGACAAGGCGATTGGCCATTTCGCCCATTTCACCCGCCTGCGCGCTACCGCCGACTGGCTGGAG 
CAGATCGCCAAGAACCTCACCAAGCTGCTCGCCCAGCACCCGCTGCCGGGTGACCTCGGCCGCCTGATCGAA 
CAGGTGCCGGAGCTGGCCCGGGAGATCAAGACCCAGCAGCAGTTCATGTTCACCGCCTGCGAAGAGATCGGC 
GATTTCCGCGCCGGCGAGGACATGGAAGGTCGCGAGCGGCCGCGTCACCGTTTCGTCGGCGGGGTGGTCCCC 
GAGCATATCCGCGAGATGGGCATCGAGCTGAAGAAAGGCTTCTCCAAGCTGACCGACCTGTTCACCCGCCTC 
ACCGATATCCTCAAGGAGGCGATGGACGGCGAAGGCGCCGGCGGCATCGCCAGCCACCAGGCGGAGGAGTGG 
TACCCGCTGTTCGGTAGTCTTTTGGCGCGCGCCCAGGGCAACTGGGAACTGTGGACCGCCTTCACCTGCGAG 
GACCCGCAGGACAGCCCGCCGATGGCGCGCTGGCTGACCCTCGCCGAGAGCGGCAGCTTCTACGACATCGAA 
GCCAACGCCAGCCCGATCCTCGCCGCCGAGACCCTGCGCCGCAACCTGTGGAACGTCGCCTATGGCGTGCTG 
GTGACCTCGGCGACCCTGACCGCGTTGGGCACCTTCGACCGCTATCGCATGCGCGCCGGCCTGCCGCGCAAC 
GCGGTCACCGCGGTGGTGCCGAGCCCCTTCCATCATGCCGAGGCCGGGGTATTGCGGGTCCCCGACCTCAAG 
GCGGATCCGCGCAACGCCGCCGAGCACACCGCGGCGATCATTCGCGAGCTGCCGGAACTGGTGAAGGGCGCG 
CGCGGCAGCCTGGTGCTGTTCTCCTCGCGCAAGCAGATGCAGGAGGTCTTCGACGGTCTCGACCGCGACTGG 
CGCAAGCGGGTGTTCATCCAGGGCAACCTGTCCAAGCAGGAAACCCTGAACAAGCACAAGTCGCGAGTCGAC 
GACGGTGAGGACAGCGTGCTCTTCGGCCTCGCCAGCTTCGCCGAAGGCGTGGACCTGCCGGGGGCCTATTGC 
GAACACGTGGTGATCGCCAAGATTCCCTTCGCGGTACCCGACGACCCGGTGGAGGCGGCGCTGGCCGAGTGG 
ATCGAGGCGCGCGGCGGCAATCCGTTCATGGAGATCGCCGTGCCAGACGCCTCGCTGCGGTTGGTCCAGGCC 
TGCGGGCGGCTGCTGCGCACCGAGCAGGACCGCGGCACCATCACCCTGCTGGATCGCCGCGTGGTCACCCAG 
CGCTACGGCAAGGCTATCCTCAATGCATTGCCGCCGTTCCGGCGGGAAATCGCCTGA