ViewGene
Locus Name:
GeneID:
Location:

GeneID:2718
TrivialName: PA14_06880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06880
PAO1 Ortholog Locus:PA0528
Sequence Length:879
Protein Length:292
Start: 597868
Stop: 596990
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03917.1|AE004489_9 (AE004489) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 292/292 (100%), Positives = 292/292 (100%)
Sequence:
ATGGATTTTCGCCAACTCCGCTATTTCGTCGCGCTCTACGAGGAAGGCCACGTCGGCCGCGCCGCCGAACGC
CTGGCCCTGTCGCAACCGGCCCTCTCGCAGCAGATCCGCCAGTTGGAGCAGAACCTCGACGTCTCGCTGTTC
CAGCGCAGCGGCAAGCGCCTGCTGCCGACCGTCGCCGCCCACACCCTGTACAACCATGCGGTACCGCTGCTG
GAGGGATTGGAAAGGGCCCGCGAGGCGATGCGCGTATTCCGCGGGCAGACCCCGCGCAGCCTGGCGATCGGC
GTGCTGCAGACGGTCAACGCCAGCCTGGTGCCGTACATGGTCGAACGCCTGCACGCCGCGCAGCCGCATCTG
CGGGTGCAGATCTACGAACTGTCGGGAATCGACATCGAGCGGCGCCTGCTCACCGGCAACCTGGATATCGGC
ATCGGCTTCCTGCCGCCGCGCCAGCCGGGCTTGCACAGCGTCGAGCTGTACGAGGACGAATTGCAGCTGGTG
ATCCCCGAGGAACACCCGTTGAAGGAGTTCAGAAAGGTGTCCCTGGCCCAGGCCGCGGAGTTGCCGATGCTG
CTGCTCGGCGAAGAGTTCCGCGCGCGCCAGATCTGGCAGGAGCAACTCGCCGCGATCGGCCGGCGGCCGCGG
GTGCAGGCGGAACTGAACCACATGAGCGGGATTCTCGACAGCCTGCCGCAGACCCGCTTCGCCACCGTTCTA
CCGGGCAAGGCACGGCAGATGCACTCGAACCAGCGGCTGCTGTGGAAACCGCTCAGCGAACCGCGCATCCCG
CTGAAGGTCGGCCTGGTCTACCGCGACGCGCAACGCCAGCACGCCAGCGTCGAGCTGCTGCGCTCGCTGCTG
GAAGGCGTGGTCTGA
Translation:
MDFRQLRYFVALYEEGHVGRAAERLALSQPALSQQIRQLEQNLDVSLFQRSGKRLLPTVAAHTLYNHAVPLL
EGLERAREAMRVFRGQTPRSLAIGVLQTVNASLVPYMVERLHAAQPHLRVQIYELSGIDIERRLLTGNLDIG
IGFLPPRQPGLHSVELYEDELQLVIPEEHPLKEFRKVSLAQAAELPMLLLGEEFRARQIWQEQLAAIGRRPR
VQAELNHMSGILDSLPQTRFATVLPGKARQMHSNQRLLWKPLSEPRIPLKVGLVYRDAQRQHASVELLRSLL
EGVV*
AnnotationID:2726GeneID:2718
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 12:12:59
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA0528
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66002.1|AE016229_3 (AE016775) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 307

 Score =  444 bits (1143), Expect = e-124
 Identities = 222/290 (76%), Positives = 260/290 (89%), Gaps = 1/290 (0%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  96.6% aligned
Score =  126 bits (316), Expect = 4e-30
Identities = 97/291 (33%), Positives = 144/291 (49%), Gaps = 7/291 (2%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues,  97.6% aligned
Score =  110 bits (275), Expect = 2e-25
Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 1/204 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5439




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22583




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33783




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2718_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2718
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4445
                           PA0528_tr
                           translation of PA0528
                           292
                           99.99
                           99.99
                           0
                           1469.0
     

     
     
129083
                           gb|AAG03917.1|AE004489_9
                           (AE004489) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           292
                           99.99
                           99.99
                           0
                           1469.0
     

     
     
129084
                           gb|AAP92448.1|
                           (AY266632) putative transcriptional regulator [Pseudomonas fluorescens]
                           309
                           72.81
                           85.43
                           17
                           1175.0
     

     
     
129085
                           gb|AAN66002.1|AE016229_3
                           (AE016775) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           307
                           72.31
                           84.69
                           15
                           1141.0
     

     






      

          
GC ORFID: 45720How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0528Glimmer Score: 

          
Start: 6399210Stop: 6398332

          
Length: 879


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0528 translation of PA0528Homolog Bit Score 570.0

          
Other Homologs:  t_PA0528 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATTTTCGCCAACTCCGCTATTTCGTCGCGCTCTACGAGGAAGGCCACGTCGGCCGCGCCGCCGAACGC 
CTGGCCCTGTCGCAACCGGCCCTCTCGCAGCAGATCCGCCAGTTGGAGCAGAACCTCGACGTCTCGCTGTTC 
CAGCGCAGCGGCAAGCGCCTGCTGCCGACCGTCGCCGCCCACACCCTGTACAACCATGCGGTACCGCTGCTG 
GAGGGATTGGAAAGGGCCCGCGAGGCGATGCGCGTATTCCGCGGGCAGACCCCGCGCAGCCTGGCGATCGGC 
GTGCTGCAGACGGTCAACGCCAGCCTGGTGCCGTACATGGTCGAACGCCTGCACGCCGCGCAGCCGCATCTG 
CGGGTGCAGATCTACGAACTGTCGGGAATCGACATCGAGCGGCGCCTGCTCACCGGCAACCTGGATATCGGC 
ATCGGCTTCCTGCCGCCGCGCCAGCCGGGCTTGCACAGCGTCGAGCTGTACGAGGACGAATTGCAGCTGGTG 
ATCCCCGAGGAACACCCGTTGAAGGAGTTCAGAAAGGTGTCCCTGGCCCAGGCCGCGGAGTTGCCGATGCTG 
CTGCTCGGCGAAGAGTTCCGCGCGCGCCAGATCTGGCAGGAGCAACTCGCCGCGATCGGCCGGCGGCCGCGG 
GTGCAGGCGGAACTGAACCACATGAGCGGGATTCTCGACAGCCTGCCGCAGACCCGCTTCGCCACCGTTCTA 
CCGGGCAAGGCACGGCAGATGCACTCGAACCAGCGGCTGCTGTGGAAACCGCTCAGCGAACCGCGCATCCCG 
CTGAAGGTCGGCCTGGTCTACCGCGACGCGCAACGCCAGCACGCCAGCGTCGAGCTGCTGCGCTCGCTGCTG 
GAAGGCGTGGTCTGA