ViewGene
Locus Name:
GeneID:
Location:

GeneID:2717
TrivialName: PA14_06150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06150
PAO1 Ortholog Locus:PA0469
Sequence Length:858
Protein Length:285
Start: 541813
Stop: 542670
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03858.1|AE004484_10 (AE004484) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 284/285 (99%), Positives = 285/285 (100%)
Sequence:
ATGGCCACAGTGGAAATACTCGGGGCGGAATGCCGCGCGGGGGGCGCGGTGAACGACGATGCGCTGGGCTGC
ACGGCGCAGGCCGCCTGGGTGATCGACGGTGCCACCAGCATCGGTCGCAGCGTGCTGGGCGTGGAAAGCGAC
GCGCGCTGGCTGGCCCAGGCGGTGGACCGGCACCTGCGGTTGCTGCTGGAAGTCGAGCCCGAGCAATCCAGC
GAGACCCTGCTGCGGCGCCTGCTCAACGATATCCAGGGCGACTTCCGCGCCCAGAGCGGCCGCGACTGGCAC
GACCTCGAAGACATGCCGGCGGCCTGCCTGAGCCTGCTGCGGATTCGCGGCGGAGAAATCGAACTGCTCAAC
ATCGGCGACAGCCGGATTCTCGTCGAAGGCGCCGACGGCCAGGTACGCAGCTTCGGCGATTCGGCCCTGTAC
GAACTGGACCGGCAATCCCTGGCGCATTTCTGCCGGATGCGCGAGGAACATCCGCAGTGGGATCACGCCGAA
CTGTTCAAGGCCAGCCGCCCGCGCGTGCGGCAGAACCGCCTGCTGATGAACAAGCCCGAGGGCTACTGGGCG
CTGGACATCAGCGACCGCTGGCTCGGCCAGGTGCAGCGCGAGACCTTGCCGCTCGCCGCGTTGCGTTCCTTC
GTGCTGATGACCGACGGCTTCGACCGGCTGGTCGAGCCTTTCCGCCGCTATACCGACGAACAGTTGCTGCGG
CGCCTCGAGGACGTCGGAGTGAGCGCCATGCTCGACGAGTTGCGCGAGATCGAACAGGGCGACGACCAGGCC
CTGGCTTTCCCGCGTTTCAAGATCCACGACGACGCCAGCGCGCTGTGGGGTCGGATCGCGGGGTGA
Translation:
MATVEILGAECRAGGAVNDDALGCTAQAAWVIDGATSIGRSVLGVESDARWLAQAVDRHLRLLLEVEPEQSS
ETLLRRLLNDIQGDFRAQSGRDWHDLEDMPAACLSLLRIRGGEIELLNIGDSRILVEGADGQVRSFGDSALY
ELDRQSLAHFCRMREEHPQWDHAELFKASRPRVRQNRLLMNKPEGYWALDISDRWLGQVQRETLPLAALRSF
VLMTDGFDRLVEPFRRYTDEQLLRRLEDVGVSAMLDELREIEQGDDQALAFPRFKIHDDASALWGRIAG*
AnnotationID:2725GeneID:2717
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 08:08:01
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0469
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:5437




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22581




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2717
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4444
                           PA0469_tr
                           translation of PA0469
                           285
                           99.64
                           99.99
                           0
                           1469.0
     

     
     
129082
                           gb|AAG03858.1|AE004484_10
                           (AE004484) hypothetical protein PA0469 [Pseudomonas aeruginosa PAO1]
                           285
                           99.64
                           99.99
                           0
                           1469.0
     

     






      

          
GC ORFID: 45719How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0469Glimmer Score: 

          
Start: 6343155Stop: 6344012

          
Length: 858


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0469 translation of PA0469Homolog Bit Score 570.0

          
Other Homologs:  t_PA0469 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCACAGTGGAAATACTCGGGGCGGAATGCCGCGCGGGGGGCGCGGTGAACGACGATGCGCTGGGCTGC 
ACGGCGCAGGCCGCCTGGGTGATCGACGGTGCCACCAGCATCGGTCGCAGCGTGCTGGGCGTGGAAAGCGAC 
GCGCGCTGGCTGGCCCAGGCGGTGGACCGGCACCTGCGGTTGCTGCTGGAAGTCGAGCCCGAGCAATCCAGC 
GAGACCCTGCTGCGGCGCCTGCTCAACGATATCCAGGGCGACTTCCGCGCCCAGAGCGGCCGCGACTGGCAC 
GACCTCGAAGACATGCCGGCGGCCTGCCTGAGCCTGCTGCGGATTCGCGGCGGAGAAATCGAACTGCTCAAC 
ATCGGCGACAGCCGGATTCTCGTCGAAGGCGCCGACGGCCAGGTACGCAGCTTCGGCGATTCGGCCCTGTAC 
GAACTGGACCGGCAATCCCTGGCGCATTTCTGCCGGATGCGCGAGGAACATCCGCAGTGGGATCACGCCGAA 
CTGTTCAAGGCCAGCCGCCCGCGCGTGCGGCAGAACCGCCTGCTGATGAACAAGCCCGAGGGCTACTGGGCG 
CTGGACATCAGCGACCGCTGGCTCGGCCAGGTGCAGCGCGAGACCTTGCCGCTCGCCGCGTTGCGTTCCTTC 
GTGCTGATGACCGACGGCTTCGACCGGCTGGTCGAGCCTTTCCGCCGCTATACCGACGAACAGTTGCTGCGG 
CGCCTCGAGGACGTCGGAGTGAGCGCCATGCTCGACGAGTTGCGCGAGATCGAACAGGGCGACGACCAGGCC 
CTGGCTTTCCCGCGTTTCAAGATCCACGACGACGCCAGCGCGCTGTGGGGTCGGATCGCGGGGTGA