ViewGene
Locus Name:
GeneID:
Location:

GeneID:2716
TrivialName: PA14_02890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02890
PAO1 Ortholog Locus:PA0234
Sequence Length:834
Protein Length:277
Start: 253792
Stop: 254625
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03623.1|AE004461_6 (AE004461) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 273/277 (98%), Positives = 275/277 (99%)
Sequence:
ATGAAGAAGATGATGCAGGGCGCCGCCGCCCTGATCGCGCTCGTCGGCGCCGGGGAGAGCATGGCGCTGGAA
TGGATGAGCAACAGCGTCGGTTTCCGCTACGGCCAGCAATTCACCAACCCGAACAACCCGGACAAGTTCGCC
AAGCGCATCTACAGCTTCACCCACGCCGACGGCTATCGCTACGGCAGCAATTTCTTCAATCTCGATGTGTTC
CTTTCCGACAGCCGCGACCCGCGCAAGGGCACCGACCACGGTGGCAGCGAGGTCTATGCGGTCTACCGCCAC
CAGCTCTACGCCTCGCGGGTGTTCGACCGGCCGCTGGGCACCGGCCTGGTCAAGGACTACGCCTTCACCCTG
GGCTTCGACGCCAGCCGCAACAACAACCTGGCTTCGGCCAAGAAGCGCGCCCTGGTGTTCGGCCCGACCCTC
AAGTTCAATGGTCCCGGCGTGCTCGACCTGAGCCTGCTCTACTACCGCGAGAAGAACCACTTCGGCGTGCCC
GGCGCGCGCCATCCCGACCACACCTTCGACACCACCTACATGCTCAACCTGACCTGGATGCGGCCGTTCAAG
GTCGGCAACCGTGCGGCGAAGTTCCAGGGCTTCGTCAACTACGTGGGAGAGAAGGGCGAGGACTACAACGAC
AAGGACACCGCGGCGGAAACCCTGGTCCGCACCGCCCTGATGGTCGCCGCCCTGCCAGGCGACAAGCGCCAG
CCGAACCTGTGGCTCGGCGTCGGCTACGAGTATTGGCACAACAAGTTCGGCGTCGACGGCGGCACCGGCAGC
CGCACCTCGACGCCGACGTTGAACATGGAATTCACCTTCTGA
Translation:
MKKMMQGAAALIALVGAGESMALEWMSNSVGFRYGQQFTNPNNPDKFAKRIYSFTHADGYRYGSNFFNLDVF
LSDSRDPRKGTDHGGSEVYAVYRHQLYASRVFDRPLGTGLVKDYAFTLGFDASRNNNLASAKKRALVFGPTL
KFNGPGVLDLSLLYYREKNHFGVPGARHPDHTFDTTYMLNLTWMRPFKVGNRAAKFQGFVNYVGEKGEDYND
KDTAAETLVRTALMVAALPGDKRQPNLWLGVGYEYWHNKFGVDGGTGSRTSTPTLNMEFTF*
AnnotationID:2724GeneID:2716
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 18:06:37
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0234
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits at any threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:5435




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22579




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2716
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4443
                           PA0234_tr
                           translation of PA0234
                           277
                           98.55
                           99.27
                           0
                           1470.0
     

     
     
129081
                           gb|AAG03623.1|AE004461_6
                           (AE004461) hypothetical protein PA0234 [Pseudomonas aeruginosa PAO1]
                           277
                           98.55
                           99.27
                           0
                           1470.0
     

     






      

          
GC ORFID: 45718How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0234Glimmer Score: 

          
Start: 6055133Stop: 6055966

          
Length: 834


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0234 translation of PA0234Homolog Bit Score 570.0

          
Other Homologs:  t_PA0234 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGAAGATGATGCAGGGCGCCGCCGCCCTGATCGCGCTCGTCGGCGCCGGGGAGAGCATGGCGCTGGAA 
TGGATGAGCAACAGCGTCGGTTTCCGCTACGGCCAGCAATTCACCAACCCGAACAACCCGGACAAGTTCGCC 
AAGCGCATCTACAGCTTCACCCACGCCGACGGCTATCGCTACGGCAGCAATTTCTTCAATCTCGATGTGTTC 
CTTTCCGACAGCCGCGACCCGCGCAAGGGCACCGACCACGGTGGCAGCGAGGTCTATGCGGTCTACCGCCAC 
CAGCTCTACGCCTCGCGGGTGTTCGACCGGCCGCTGGGCACCGGCCTGGTCAAGGACTACGCCTTCACCCTG 
GGCTTCGACGCCAGCCGCAACAACAACCTGGCTTCGGCCAAGAAGCGCGCCCTGGTGTTCGGCCCGACCCTC 
AAGTTCAATGGTCCCGGCGTGCTCGACCTGAGCCTGCTCTACTACCGCGAGAAGAACCACTTCGGCGTGCCC 
GGCGCGCGCCATCCCGACCACACCTTCGACACCACCTACATGCTCAACCTGACCTGGATGCGGCCGTTCAAG 
GTCGGCAACCGTGCGGCGAAGTTCCAGGGCTTCGTCAACTACGTGGGAGAGAAGGGCGAGGACTACAACGAC 
AAGGACACCGCGGCGGAAACCCTGGTCCGCACCGCCCTGATGGTCGCCGCCCTGCCAGGCGACAAGCGCCAG 
CCGAACCTGTGGCTCGGCGTCGGCTACGAGTATTGGCACAACAAGTTCGGCGTCGACGGCGGCACCGGCAGC 
CGCACCTCGACGCCGACGTTGAACATGGAATTCACCTTCTGA