ViewGene
Locus Name:
GeneID:
Location:

GeneID:2714
TrivialName: PA14_55930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55930
PAO1 Ortholog Locus:PA4305
Sequence Length:912
Protein Length:303
Start: 4993999
Stop: 4993088
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07693.1|AE004846_10 (AE004846) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 298/303 (98%), Positives = 299/303 (98%)
Sequence:
ATGAATAGCAAGGTGCTGATGGCCCTGGCCGGCCTGCTGCTGCTCGGTGCGGTGCTGCTCGGATACCTCGGC
GTATCCATCGGCCGCGCGCCATCGAACGCGCATGCTCCATCCGTGGCGCCGGCTTCGGCGGCGGTGGACGCT
TCGCTGGAAAAGCTCGAACGCAAGCCGGTGCTGGTGGCCAGTCGCGATCTCCCGGCGCTGGCGGTGATCGGC
AAGGACGACCTGAGCGTCGAGCGGTTGCGGACCGCACCGGTCGGTAGCTACGACAGGCCCGAGGCGTTGCTC
GGCAAGCGGGTCTGGGTCGCGGTGCCGGCCGGCAGCATTCTTTCCGCCGCGACCCTAGAACCCGGCGGTCCG
CTGGCCCGGACCATCCGTCCGGACGAGCGGGCGATGGCGATCGCTGTGGACGAAGTGGTCGGCGGCGGCGGC
TTCGTCCTGCCCGGCGACTATGTCGACGTGATGCTCTTCGTGCGTGACGAGCGGGACGGCGAATCGACCCCG
CTGGCGCAACTGGTGTTGCCCGGCGTCCGGGTACTGACCTACGGCGAGCGGATCGCCGTGGGCAGCGATGGG
CAGGACCGCTCGAACCAGGAAAAGGACCCGCGTCCGCCGCGTACCGCGGTGCTGGCGGTACCGGAGGACGGC
GTGGCGCGGCTGATGCTGGCGAGCCAGGCCGGTTCGCTGCGCCTGGCCATCCGCAGCAAGGACGAAGAACTC
TACCGCAGGGAGCAGGAAGGCGCGCTGCTGCAAGCGTCGCTGGGCGCGCCGAGCGCGGTGCTGAGCCTCGAC
CAACTGCTGGAGCGCCGCAAACCGACGGCGCCGAGCGTGCGCAGCACGGCTCCGCGCGTGCCGGTGGCCAAC
GGGGTCACGGTCTACCGTGGCAGCGCCATGACCCATGAAGCGCCTTGA
Translation:
MNSKVLMALAGLLLLGAVLLGYLGVSIGRAPSNAHAPSVAPASAAVDASLEKLERKPVLVASRDLPALAVIG
KDDLSVERLRTAPVGSYDRPEALLGKRVWVAVPAGSILSAATLEPGGPLARTIRPDERAMAIAVDEVVGGGG
FVLPGDYVDVMLFVRDERDGESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDG
VARLMLASQAGSLRLAIRSKDEELYRREQEGALLQASLGAPSAVLSLDQLLERRKPTAPSVRSTAPRVPVAN
GVTVYRGSAMTHEAP*
AnnotationID:2722GeneID:2714
AnnotatorUID: diggins
Modification Date/Time: 2005-06-09 14:02:51
Gene Name:
Confidence Code:3
GeneProduct:putative pilus assembly protein
Cell Localization:()
Synonyms:PA4305
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam06981
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam06981, CpaB, Flp pilus assembly protein CpaB.
CD-Length = 132 residues, 100.0% aligned
Score =  113 bits (283), Expect = 4e-26
Identities = 65/141 (46%), Positives = 80/141 (56%), Gaps = 12/141 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5431




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22576




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36669




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2714_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2714
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4441
                           PA4305_tr
                           translation of PA4305
                           303
                           98.34
                           98.67
                           0
                           1470.0
     

     
     
129076
                           gb|AAG07693.1|AE004846_10
                           (AE004846) hypothetical protein PA4305 [Pseudomonas aeruginosa PAO1]
                           303
                           98.34
                           98.67
                           0
                           1470.0
     

     






      

          
GC ORFID: 45716How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4305Glimmer Score: 

          
Start: 4257675Stop: 4256764

          
Length: 912


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4305 translation of PA4305Homolog Bit Score 570.0

          
Other Homologs:  t_PA4305 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATAGCAAGGTGCTGATGGCCCTGGCCGGCCTGCTGCTGCTCGGTGCGGTGCTGCTCGGATACCTCGGC 
GTATCCATCGGCCGCGCGCCATCGAACGCGCATGCTCCATCCGTGGCGCCGGCTTCGGCGGCGGTGGACGCT 
TCGCTGGAAAAGCTCGAACGCAAGCCGGTGCTGGTGGCCAGTCGCGATCTCCCGGCGCTGGCGGTGATCGGC 
AAGGACGACCTGAGCGTCGAGCGGTTGCGGACCGCACCGGTCGGTAGCTACGACAGGCCCGAGGCGTTGCTC 
GGCAAGCGGGTCTGGGTCGCGGTGCCGGCCGGCAGCATTCTTTCCGCCGCGACCCTAGAACCCGGCGGTCCG 
CTGGCCCGGACCATCCGTCCGGACGAGCGGGCGATGGCGATCGCTGTGGACGAAGTGGTCGGCGGCGGCGGC 
TTCGTCCTGCCCGGCGACTATGTCGACGTGATGCTCTTCGTGCGTGACGAGCGGGACGGCGAATCGACCCCG 
CTGGCGCAACTGGTGTTGCCCGGCGTCCGGGTACTGACCTACGGCGAGCGGATCGCCGTGGGCAGCGATGGG 
CAGGACCGCTCGAACCAGGAAAAGGACCCGCGTCCGCCGCGTACCGCGGTGCTGGCGGTACCGGAGGACGGC 
GTGGCGCGGCTGATGCTGGCGAGCCAGGCCGGTTCGCTGCGCCTGGCCATCCGCAGCAAGGACGAAGAACTC 
TACCGCAGGGAGCAGGAAGGCGCGCTGCTGCAAGCGTCGCTGGGCGCGCCGAGCGCGGTGCTGAGCCTCGAC 
CAACTGCTGGAGCGCCGCAAACCGACGGCGCCGAGCGTGCGCAGCACGGCTCCGCGCGTGCCGGTGGCCAAC 
GGGGTCACGGTCTACCGTGGCAGCGCCATGACCCATGAAGCGCCTTGA