ViewGene
Locus Name:
GeneID:
Location:

GeneID:2713
TrivialName: PA14_28630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28630
PAO1 Ortholog Locus:PA2745
Sequence Length:864
Protein Length:287
Start: 2466106
Stop: 2466969
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06133.1|AE004702_10 (AE004702) probable hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 287/287 (100%), Positives = 287/287 (100%)
Sequence:
ATGAGTGGCGAACTCGCCTCGTTCGAGGTGGATGGGTATCAACTGGTCTATCAGGACCTGGGCGAGGGCACG
CCGGTGCTACTGGTCCACGGTTCGCTCTGCGACTACCGCTACTGGCAATGGCAGTTGCGCAGCCTCGGCGAG
CGCCACCGGCTGATCGTGCCGAGCCTGCGTCACTACTACCCCGAGCGCTGGGACGGGCAGGGTGCGGACTTC
ACCAGCGCCCGCCACGTCGCCGACCTGCTGGCGCTGGTCGAGCGGCTCGGCGAGCCGGTACACCTGCTCGGC
CATTCCCGTGGCGGCAACCTGGCGTTGCGCCTGGCGCTGGCCGCTCCGGACGCCCTGCGTTCGCTGAGCCTG
GCCGATCCCGGCGGCGACTATGCCGCCGAGGTCTACGCCCACGCCGGCCTGCCTGCGCCCGAGGAACCATTG
GAACGCAACCAGTTCCGGCGCCAGGCGCTCGAATTGATCCGTGGCGGCGAGGCGGAACGGGGACTGGAACTG
TTCGTCGATACGGTGAGCGGCGCCGGGGTATGGAAACGCTCGTCGGCGACGTTCCGCCGAATGACGCTGGAC
AACGCCATGACCCTGGTCGGGCAGGTGGCCGACCAGCCGCCGGCGCTGGCGCTGTCGGAACTGCGCTCGATC
GACCTGCCGAGCCTGATCCTCAATGGCGAACGCAGCCCGCTGCCATTCCCGGCCACCGCCGAGGCGCTGGCG
GCGGCCCTGCCGCGCGCCGAGCTGCAACGCATCCAGGGCGCGTCCCATGGCCTCAATGCCACCCGTCCGGCG
GCTTTCAACCGGTCGGTGCTGGAGTTCCTGGCGCGCGTCGATGGCGTTGCGCCGGACGTGGAAACGTCCTGA
Translation:
MSGELASFEVDGYQLVYQDLGEGTPVLLVHGSLCDYRYWQWQLRSLGERHRLIVPSLRHYYPERWDGQGADF
TSARHVADLLALVERLGEPVHLLGHSRGGNLALRLALAAPDALRSLSLADPGGDYAAEVYAHAGLPAPEEPL
ERNQFRRQALELIRGGEAERGLELFVDTVSGAGVWKRSSATFRRMTLDNAMTLVGQVADQPPALALSELRSI
DLPSLILNGERSPLPFPATAEALAAALPRAELQRIQGASHGLNATRPAAFNRSVLEFLARVDGVAPDVETS*
AnnotationID:2721GeneID:2713
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 08:08:14
Gene Name:
Confidence Code:2
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA2745
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative acyltransferase
Functional Category Confidence Code:5
COGs:COG0596
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE34611.1| (BX640449) putative hydrolase [Bordetella bronchiseptica]
          Length = 268

 Score =  254 bits (650), Expect = 3e-67
 Identities = 128/272 (47%), Positives = 168/272 (61%), Gaps = 13/272 (4%)








 
Structural Features:
COG0596, MhpC, Predicted hydrolases or acyltransferases 
(alpha/beta hydrolase superfamily)
CD-Length = 282 residues, 100.0% aligned
Score = 89.0 bits (218), Expect = 6e-19
Identities = 83/286 (29%), Positives = 118/286 (41%), Gaps = 16/286 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5429




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22574




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36295




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2713_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2713
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4440
                           PA2745_tr
                           translation of PA2745
                           287
                           99.99
                           99.99
                           0
                           1470.0
     

     
     
129072
                           gb|AAG06133.1|AE004702_10
                           (AE004702) probable hydrolase [Pseudomonas aeruginosa PAO1]
                           287
                           99.99
                           99.99
                           0
                           1470.0
     

     
     
129073
                           emb|CAE34611.1|
                           (BX640449) putative hydrolase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           292
                           44.52
                           58.21
                           29
                           657.0
     

     
     
129074
                           emb|CAE39085.1|
                           (BX640434) putative hydrolase [Bordetella parapertussis]
                           292
                           44.52
                           58.21
                           29
                           657.0
     

     
     
129075
                           dbj|BAC53074.1|
                           (AP005963) blr7809 [Bradyrhizobium japonicum USDA 110]
                           292
                           40.06
                           57.19
                           25
                           525.0
     

     






      

          
GC ORFID: 45715How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2745Glimmer Score: 

          
Start: 2487820Stop: 2486957

          
Length: 864


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2745 translation of PA2745Homolog Bit Score 570.0

          
Other Homologs:  t_PA2745 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGGCGAACTCGCCTCGTTCGAGGTGGATGGGTATCAACTGGTCTATCAGGACCTGGGCGAGGGCACG 
CCGGTGCTACTGGTCCACGGTTCGCTCTGCGACTACCGCTACTGGCAATGGCAGTTGCGCAGCCTCGGCGAG 
CGCCACCGGCTGATCGTGCCGAGCCTGCGTCACTACTACCCCGAGCGCTGGGACGGGCAGGGTGCGGACTTC 
ACCAGCGCCCGCCACGTCGCCGACCTGCTGGCGCTGGTCGAGCGGCTCGGCGAGCCGGTACACCTGCTCGGC 
CATTCCCGTGGCGGCAACCTGGCGTTGCGCCTGGCGCTGGCCGCTCCGGACGCCCTGCGTTCGCTGAGCCTG 
GCCGATCCCGGCGGCGACTATGCCGCCGAGGTCTACGCCCACGCCGGCCTGCCTGCGCCCGAGGAACCATTG 
GAACGCAACCAGTTCCGGCGCCAGGCGCTCGAATTGATCCGTGGCGGCGAGGCGGAACGGGGACTGGAACTG 
TTCGTCGATACGGTGAGCGGCGCCGGGGTATGGAAACGCTCGTCGGCGACGTTCCGCCGAATGACGCTGGAC 
AACGCCATGACCCTGGTCGGGCAGGTGGCCGACCAGCCGCCGGCGCTGGCGCTGTCGGAACTGCGCTCGATC 
GACCTGCCGAGCCTGATCCTCAATGGCGAACGCAGCCCGCTGCCATTCCCGGCCACCGCCGAGGCGCTGGCG 
GCGGCCCTGCCGCGCGCCGAGCTGCAACGCATCCAGGGCGCGTCCCATGGCCTCAATGCCACCCGTCCGGCG 
GCTTTCAACCGGTCGGTGCTGGAGTTCCTGGCGCGCGTCGATGGCGTTGCGCCGGACGTGGAAACGTCCTGA