ViewGene
Locus Name:
GeneID:
Location:

GeneID:2710
TrivialName: PA14_44670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44670
PAO1 Ortholog Locus:PA1528
Sequence Length:870
Protein Length:289
Start: 3979616
Stop: 3978747
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04917.1|AE004581_4 (AE004581) cell division protein ZipA [Pseudomonas aeruginosa PAO1]
Identities = 287/289 (99%), Positives = 287/289 (99%)
Sequence:
ATGGATATCGGTCTGCGCGAATGGCTTATCGTTATCGGGCTTATCGTGATCGCCGGCATTCTCTTCGACGGT
TGGCGGCGGATGCGGGGCGGCAAGGGCAAGTTGAAGTTCAAGCTCGACCGCAGTTTCGCCAATCTGCCGGAC
GACGACGGCGACTCGGCTGAACTGCTGGGGCCGGCGCGGGTGGTCGAGCATCGCGAGCCGTCCTTCGACGAA
CAGGACCTGCCCAGCGTCAGTGCCCGCGAAACCAAGGAGCGCAAGGGCGGCAAGCGCCAGGAAGAGCCGCGC
CAGGGCGATCTGGACCTCGACGAGGGGCTGGCCCTTGAGGCGGACCCGAGCGATGCCGCCGAGCCGGTGGAG
CCACGCAAGGGCAAGTCGAAGGGACGCAAGGAGAAAGAGCGGGAGAAAGCCCCTGCGGTCGCTGCCGAACCT
GCTCCGGTCGACGAGGTGCTGATCATCAACGTCATCGCCCGCGACGAAAGCGGCTTCAAGGGGCCGGCCTTG
CTGCAGAACATCCTCGAGAGCGGCCTGCGCTTCGGCGACATGGACATCTTCCATCGCCACGAAAGCATGGCC
GGCAATGGCGAGATCCTGTTCTCCATGGCCAATGCGGTGAAACCGGGCACTTTCGACCTGGACGACATCGAC
AACTTCAGCACCCGCGCCGTGAGCTTCTTCCTCGGCCTGCCGGGGCCGCGCCATCCGAAGCAGGCCTTCGAC
GTGATGGTCGCCGCCGCGCGCAAGCTGGCCCACGAGCTGAACGGCGAGCTGAAGGACGAGCAGCGCAGCGTG
CTGACCGCCCAGACCATCGAGCACTACCGCCAGCGCATCATCGACCATGAGCGCCGCAGCTTGATGCAGAAG
CGCTGA
Translation:
MDIGLREWLIVIGLIVIAGILFDGWRRMRGGKGKLKFKLDRSFANLPDDDGDSAELLGPARVVEHREPSFDE
QDLPSVSARETKERKGGKRQEEPRQGDLDLDEGLALEADPSDAAEPVEPRKGKSKGRKEKEREKAPAVAAEP
APVDEVLIINVIARDESGFKGPALLQNILESGLRFGDMDIFHRHESMAGNGEILFSMANAVKPGTFDLDDID
NFSTRAVSFFLGLPGPRHPKQAFDVMVAAARKLAHELNGELKDEQRSVLTAQTIEHYRQRIIDHERRSLMQK
R*
AnnotationID:2718GeneID:2710
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 08:08:24
Gene Name:zipA
Confidence Code:2
GeneProduct:cell division protein ZipA
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3115,cd00231
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69855.1|AE016624_6 (AE016790) cell division protein ZipA [Pseudomonas putida KT2440]
          Length = 317

 Score =  390 bits (1001), Expect = e-108
 Identities = 209/309 (67%), Positives = 241/309 (77%), Gaps = 32/309 (10%)

>gb|AAO57126.1| (AE016869) cell division protein ZipA, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 288

 Score =  386 bits (991), Expect = e-107
 Identities = 204/300 (68%), Positives = 242/300 (80%), Gaps = 24/300 (8%)








 
Structural Features:
COG3115, ZipA, Cell division protein 
[Cell division and chromosome partitioning]
CD-Length = 324 residues, 100.0% aligned
Score =  281 bits (720), Expect = 7e-77
Identities = 111/325 (34%), Positives = 157/325 (48%), Gaps = 42/325 (12%)

cd00231, ZipA, ZipA C-terminal domain.
CD-Length = 130 residues, 100.0% aligned
Score =  193 bits (493), Expect = 1e-50
Identities = 65/130 (50%), Positives = 92/130 (70%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5423




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22568




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37318




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2710_cdd.html


    		




 
URL:

















    ReferenceID:37938




  
Author/Investigator(s):
        Du Y, Arvidson CG.





  
Title:
        Identification of ZipA, a signal recognition particle-dependent protein from Neisseria gonorrhoeae.




  
PubMed:
        12644481


MedLine:
        




    
Source:
J Bacteriol. 2003 Apr;185(7):2122-30.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=12644481









           
Homologs By Global Alignment 

           

       



     
Gene ID:2710
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4436
                           PA1528_tr
                           translation of PA1528
                           289
                           99.30
                           99.30
                           0
                           1469.0
     

     
     
128963
                           gb|AAG04917.1|AE004581_4
                           (AE004581) cell division protein ZipA [Pseudomonas aeruginosa PAO1]
                           289
                           99.30
                           99.30
                           0
                           1469.0
     

     
     
128965
                           gb|AAO57126.1|
                           (AE016869) cell division protein ZipA, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           301
                           68.77
                           81.72
                           25
                           1012.0
     

     
     
128964
                           gb|AAN69855.1|AE016624_6
                           (AE016790) cell division protein ZipA [Pseudomonas putida KT2440]
                           330
                           63.63
                           73.63
                           54
                           1026.0
     

     






      

          
GC ORFID: 45712How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1528Glimmer Score: 

          
Start: 974293Stop: 975162

          
Length: 870


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1528 translation of PA1528Homolog Bit Score 570.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene829 (ORF: BLASTX 386.0), t_PA1528 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATATCGGTCTGCGCGAATGGCTTATCGTTATCGGGCTTATCGTGATCGCCGGCATTCTCTTCGACGGT 
TGGCGGCGGATGCGGGGCGGCAAGGGCAAGTTGAAGTTCAAGCTCGACCGCAGTTTCGCCAATCTGCCGGAC 
GACGACGGCGACTCGGCTGAACTGCTGGGGCCGGCGCGGGTGGTCGAGCATCGCGAGCCGTCCTTCGACGAA 
CAGGACCTGCCCAGCGTCAGTGCCCGCGAAACCAAGGAGCGCAAGGGCGGCAAGCGCCAGGAAGAGCCGCGC 
CAGGGCGATCTGGACCTCGACGAGGGGCTGGCCCTTGAGGCGGACCCGAGCGATGCCGCCGAGCCGGTGGAG 
CCACGCAAGGGCAAGTCGAAGGGACGCAAGGAGAAAGAGCGGGAGAAAGCCCCTGCGGTCGCTGCCGAACCT 
GCTCCGGTCGACGAGGTGCTGATCATCAACGTCATCGCCCGCGACGAAAGCGGCTTCAAGGGGCCGGCCTTG 
CTGCAGAACATCCTCGAGAGCGGCCTGCGCTTCGGCGACATGGACATCTTCCATCGCCACGAAAGCATGGCC 
GGCAATGGCGAGATCCTGTTCTCCATGGCCAATGCGGTGAAACCGGGCACTTTCGACCTGGACGACATCGAC 
AACTTCAGCACCCGCGCCGTGAGCTTCTTCCTCGGCCTGCCGGGGCCGCGCCATCCGAAGCAGGCCTTCGAC 
GTGATGGTCGCCGCCGCGCGCAAGCTGGCCCACGAGCTGAACGGCGAGCTGAAGGACGAGCAGCGCAGCGTG 
CTGACCGCCCAGACCATCGAGCACTACCGCCAGCGCATCATCGACCATGAGCGCCGCAGCTTGATGCAGAAG 
CGCTGA