ViewGene

Locus Name:
GeneID:
Location:

GeneID:271
TrivialName: PA14_20230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20230
PAO1 Ortholog Locus:PA3391
Sequence Length:2148
Protein Length:715
Start: 1744455
Stop: 1742308
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06779.1|AE004760_7 (AE004760) regulatory protein NosR [Pseudomonas aeruginosa PAO1]
Identities = 713/715 (99%), Positives = 715/715 (100%)
Sequence:
ATGCGCGCCCTTCGTTTTTCCGCCGGATCGTGGCGGTGTGTCTTCGCCTGGATGCTCCTGCTGGTCGGCCTC
GCCGCCCAGGGTGCCGAACTCAGCGAGTTGGAGCGTCTGCGCATCGCCCAGGTATTCCCCGCGGTCGAGCGG
ATCGGCGACCCCGAAGGCGACTACGGCGTACGCCGCCTGAGCAAGGGCGAGGAAACCCTCGGCTACGCCTTC
CAGACCCTCAGCGTCACCGACATCCCGGCCTACTCCGGCAAGCCGATCAACCTGCAGGTGATCCTCGATCCG
CAGGCGGTTATCCGCGACGCCTACGTCCTCGAACACCACGAACCGATCCTGCTGATCGGCATCCCGGAAGAG
AAGCTGCACGCCTTCAGCGCCAGGTACGACGGCGTGCGCGCCGACCAGCGGGTGGTGGTCGGCCGCTCCAGC
GACCCGCAGGCGGTTACCGTCGACGCGGTGAGCGGCGCCACGGTGACGGTGATGGTGGTCAACGAGATCGTC
ATGCGCGCCGCACATACGGTGGCGGTTTCCCTCGGCCTGATCGAGGACCGCGGCAATGTGCGGCCCAAGCCG
GCGCAGGTGCGCCAGCAACCGGCAGCGACGGCGAGCTGGAGCGAATTGCTCGGCAACGGCGCGATCCGCCGC
CTGCAGTTGAGTCGCGGGCAGATCGACGACGCCTTCAAGGGCAGCGAGGCCGAAGGCATCGGCGAAGCCGAC
GCGGCGCACCGCGACGAGCCGTTCATCGATCTCTACAGCGCCCTGCTCAACCCTCCCGCGGTGGGCCGCAGC
CTGCTCGGCGACAACCAGTACCGCGAACTGATGGCGTCGCTGAAGCCAGGCGAATACGCCTTCGTCGTGCTC
GGCGACGGCGAGTATTCCTTCAAGGGTTCCGGCTACGTGCGCGGTGGCATCTTCGATCGGGTCCAACTGCGC
CAGTTCGGCGACATCATCAGCTTCCGCGACCTCGACTACCAGCGCCTGTCGGACGTCTACGCCGAAGGCATG
CCGGAGTTCCGCGAGATGGCGATCTTCGTCGCCCGCGCCAGCCAGCGTTTCGATCCGGGCTCGCCCTGGACC
CTGGAGTTGCTCGTGCGGCGCCAGACCGGCCCGGTGGCGGGGGTATTCACCAGCTTCGAGCTGGCCTGCCAG
ACGCCCGAGGAATACCTGGAGCGGCCGCAGCCAACGGCCGAGGAACTGGCCGCCCTGGAAGAGGCTGCCCGG
CCGCTGTGGCTGCGGGTCTGGTACCAGAAGAGTTTCCAGGTCGGGGTCCTCTGTACCGCCCTCGTCCTGCTC
CTGGCGATCCTCTTCCTCCAGGACCGCCTGGTGCGACGGCCGCGCCTGATGCAGCGACTGCGCACCGGCTAC
CTGGCGTTCACCCTGGTCTACCTGGGCTGGTACAGCCTCGGCCAGCTATCGGTGGTCAACGTGCTGACCTTC
GTCCACGCGCTGTTCGAAGGCTTCCGCTGGGAGCTGTTCCTCAGCGACCCGCTGCTGTTCATCCTCTGGACC
TTCACCGCAGCCAGCCTGCTGCTCTGGGGCCGCGGCGTGTTCTGCGGCTGGCTGTGCCCGTTCGGTGCGCTA
CAGGAACTGCTCAACGAACTCGCGCGCAAGCTCCGCGTGCCGCAGTTCCAGGTGCCGTTCGCCGTGCACGAG
CGGCTCTGGGCGATCAAGTACATCATCCTGCTGGTGCTCTTCGGTCTCTCCCTGGAATCCCTGGCGCTGGCC
GAGCAGGCCGCGGAGGTGGAGCCGTTCAAGACCGCCATCACCCTCGGCTTCGACCGCCAGTGGTGGTTCGTC
GCCTACGCTGTCGCGCTGCTGGTGGTCAACCTGTTCACCCGCAAGGTCTATTGCCGCTACCTCTGCCCGCTG
GGCGCGGCCCTGGCGATCCCGGCCAAGGCGCGCCTGTTCGACTGGCTCAAGCGCCGCGCGGAATGCGGCAAG
CCGTGCCAGCTCTGTGCCCGCGAATGCGAGATCCAGGCGATCCATCCGGACGGCCGCATCGAGGCCAACGAA
TGCCACTACTGCCTCGACTGCCAGATGACCTACCACGACCAGGACAAGTGCCCGCCGCTGGTGAACAAGCGC
AAGAAGCGCGCGAAGAGCGCGCCGGCGGACAACGCGCGGATACCCGCGGAGAACCTCTGA
Translation:
MRALRFSAGSWRCVFAWMLLLVGLAAQGAELSELERLRIAQVFPAVERIGDPEGDYGVRRLSKGEETLGYAF
QTLSVTDIPAYSGKPINLQVILDPQAVIRDAYVLEHHEPILLIGIPEEKLHAFSARYDGVRADQRVVVGRSS
DPQAVTVDAVSGATVTVMVVNEIVMRAAHTVAVSLGLIEDRGNVRPKPAQVRQQPAATASWSELLGNGAIRR
LQLSRGQIDDAFKGSEAEGIGEADAAHRDEPFIDLYSALLNPPAVGRSLLGDNQYRELMASLKPGEYAFVVL
GDGEYSFKGSGYVRGGIFDRVQLRQFGDIISFRDLDYQRLSDVYAEGMPEFREMAIFVARASQRFDPGSPWT
LELLVRRQTGPVAGVFTSFELACQTPEEYLERPQPTAEELAALEEAARPLWLRVWYQKSFQVGVLCTALVLL
LAILFLQDRLVRRPRLMQRLRTGYLAFTLVYLGWYSLGQLSVVNVLTFVHALFEGFRWELFLSDPLLFILWT
FTAASLLLWGRGVFCGWLCPFGALQELLNELARKLRVPQFQVPFAVHERLWAIKYIILLVLFGLSLESLALA
EQAAEVEPFKTAITLGFDRQWWFVAYAVALLVVNLFTRKVYCRYLCPLGAALAIPAKARLFDWLKRRAECGK
PCQLCARECEIQAIHPDGRIEANECHYCLDCQMTYHDQDKCPPLVNKRKKRAKSAPADNARIPAENL*
AnnotationID:281GeneID:271
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 08:08:52
Gene Name:nosR
Confidence Code:1
GeneProduct:NosR Regulatory protein for N2O reductase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3901
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAG34385.1|AF197468_1 (AF197468) regulatory protein; NosR [Pseudomonas fluorescens]
          Length = 722

 Score = 1003 bits (2593), Expect = 0.0
 Identities = 482/698 (69%), Positives = 570/698 (81%), Gaps = 1/698 (0%)

>gb|AAK65300.1| (AE007253) NosR Regulatory protein for N2O reductase [Sinorhizobium
           meliloti]
          Length = 755

 Score =  625 bits (1613), Expect = e-178
 Identities = 341/724 (47%), Positives = 447/724 (61%), Gaps = 39/724 (5%)
Structural Features:
COG3901, NosR, Regulator of nitric oxide reductase 
transcription [Transcription]
CD-Length = 482 residues,  98.5% aligned
Score =  656 bits (1693), Expect = 0.0
Identities = 253/480 (52%), Positives = 310/480 (64%), Gaps = 16/480 (3%)
Genomic Context:
Comment:
ReferenceID:545
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17687
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32172
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:271_cdd.html
URL:
ReferenceID:34074
Author/Investigator(s): Arai H, Mizutani M, Igarashi Y.
Title: Transcriptional regulation of the nos genes for nitrous oxide reductase in Pseudomonas aeruginosa.
PubMed: 12576577
MedLine:
Source:
Microbiology. 2003 Jan;149(Pt 1):29-36.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12576577
ReferenceID:34075
Author/Investigator(s): Velasco L, Mesa S, Xu CA, Delgado MJ, Bedmar EJ.
Title: Molecular characterization of nosRZDFYLX genes coding for denitrifying nitrous oxide reductase of Bradyrhizobium japonicum.
PubMed: 15028871
MedLine:
Source:
Antonie Van Leeuwenhoek. 2004 Apr;85(3):229-35.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15028871
Homologs By Global Alignment
Gene ID:271

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
450 PA3391_tr translation of PA3391 715 99.72 99.99 0 3706.0
23890 gb|AAG06779.1|AE004760_7 (AE004760) regulatory protein NosR [Pseudomonas aeruginosa PAO1] 715 99.72 99.99 0 3706.0
23892 emb|CAA78380.1| (Z13988) NosR protein [Pseudomonas stutzeri] 726 68.04 81.12 13 2666.0
23893 gb|AAG34385.1|AF197468_1 (AF197468) regulatory protein; NosR [Pseudomonas fluorescens] 723 66.94 79.52 9 2587.0
23891 dbj|BAC00873.1| (AB054991) NosR [Pseudomonas sp. MT-1] 740 66.75 80.00 27 2679.0
GC ORFID: 43273How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3391Glimmer Score:
Start: 3209477Stop: 3211624
Length: 2148
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3391 translation of PA3391Homolog Bit Score 1432.0
Other Homologs: t_PA3391 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCGCCCTTCGTTTTTCCGCCGGATCGTGGCGGTGTGTCTTCGCCTGGATGCTCCTGCTGGTCGGCCTC
GCCGCCCAGGGTGCCGAACTCAGCGAGTTGGAGCGTCTGCGCATCGCCCAGGTATTCCCCGCGGTCGAGCGG
ATCGGCGACCCCGAAGGCGACTACGGCGTACGCCGCCTGAGCAAGGGCGAGGAAACCCTCGGCTACGCCTTC
CAGACCCTCAGCGTCACCGACATCCCGGCCTACTCCGGCAAGCCGATCAACCTGCAGGTGATCCTCGATCCG
CAGGCGGTTATCCGCGACGCCTACGTCCTCGAACACCACGAACCGATCCTGCTGATCGGCATCCCGGAAGAG
AAGCTGCACGCCTTCAGCGCCAGGTACGACGGCGTGCGCGCCGACCAGCGGGTGGTGGTCGGCCGCTCCAGC
GACCCGCAGGCGGTTACCGTCGACGCGGTGAGCGGCGCCACGGTGACGGTGATGGTGGTCAACGAGATCGTC
ATGCGCGCCGCACATACGGTGGCGGTTTCCCTCGGCCTGATCGAGGACCGCGGCAATGTGCGGCCCAAGCCG
GCGCAGGTGCGCCAGCAACCGGCAGCGACGGCGAGCTGGAGCGAATTGCTCGGCAACGGCGCGATCCGCCGC
CTGCAGTTGAGTCGCGGGCAGATCGACGACGCCTTCAAGGGCAGCGAGGCCGAAGGCATCGGCGAAGCCGAC
GCGGCGCACCGCGACGAGCCGTTCATCGATCTCTACAGCGCCCTGCTCAACCCTCCCGCGGTGGGCCGCAGC
CTGCTCGGCGACAACCAGTACCGCGAACTGATGGCGTCGCTGAAGCCAGGCGAATACGCCTTCGTCGTGCTC
GGCGACGGCGAGTATTCCTTCAAGGGTTCCGGCTACGTGCGCGGTGGCATCTTCGATCGGGTCCAACTGCGC
CAGTTCGGCGACATCATCAGCTTCCGCGACCTCGACTACCAGCGCCTGTCGGACGTCTACGCCGAAGGCATG
CCGGAGTTCCGCGAGATGGCGATCTTCGTCGCCCGCGCCAGCCAGCGTTTCGATCCGGGCTCGCCCTGGACC
CTGGAGTTGCTCGTGCGGCGCCAGACCGGCCCGGTGGCGGGGGTATTCACCAGCTTCGAGCTGGCCTGCCAG
ACGCCCGAGGAATACCTGGAGCGGCCGCAGCCAACGGCCGAGGAACTGGCCGCCCTGGAAGAGGCTGCCCGG
CCGCTGTGGCTGCGGGTCTGGTACCAGAAGAGTTTCCAGGTCGGGGTCCTCTGTACCGCCCTCGTCCTGCTC
CTGGCGATCCTCTTCCTCCAGGACCGCCTGGTGCGACGGCCGCGCCTGATGCAGCGACTGCGCACCGGCTAC
CTGGCGTTCACCCTGGTCTACCTGGGCTGGTACAGCCTCGGCCAGCTATCGGTGGTCAACGTGCTGACCTTC
GTCCACGCGCTGTTCGAAGGCTTCCGCTGGGAGCTGTTCCTCAGCGACCCGCTGCTGTTCATCCTCTGGACC
TTCACCGCAGCCAGCCTGCTGCTCTGGGGCCGCGGCGTGTTCTGCGGCTGGCTGTGCCCGTTCGGTGCGCTA
CAGGAACTGCTCAACGAACTCGCGCGCAAGCTCCGCGTGCCGCAGTTCCAGGTGCCGTTCGCCGTGCACGAG
CGGCTCTGGGCGATCAAGTACATCATCCTGCTGGTGCTCTTCGGTCTCTCCCTGGAATCCCTGGCGCTGGCC
GAGCAGGCCGCGGAGGTGGAGCCGTTCAAGACCGCCATCACCCTCGGCTTCGACCGCCAGTGGTGGTTCGTC
GCCTACGCTGTCGCGCTGCTGGTGGTCAACCTGTTCACCCGCAAGGTCTATTGCCGCTACCTCTGCCCGCTG
GGCGCGGCCCTGGCGATCCCGGCCAAGGCGCGCCTGTTCGACTGGCTCAAGCGCCGCGCGGAATGCGGCAAG
CCGTGCCAGCTCTGTGCCCGCGAATGCGAGATCCAGGCGATCCATCCGGACGGCCGCATCGAGGCCAACGAA
TGCCACTACTGCCTCGACTGCCAGATGACCTACCACGACCAGGACAAGTGCCCGCCGCTGGTGAACAAGCGC
AAGAAGCGCGCGAAGAGCGCGCCGGCGGACAACGCGCGGATACCCGCGGAGAACCTCTGA