ViewGene

Locus Name:
GeneID:
Location:

GeneID:2709
TrivialName: PA14_11560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11560
PAO1 Ortholog Locus:PA4043
Sequence Length:888
Protein Length:295
Start: 1000698
Stop: 999811
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07430.1|AE004821_3 (AE004821) geranyltranstransferase [Pseudomonas aeruginosa PAO1]
Identities = 294/295 (99%), Positives = 295/295 (100%)
Sequence:
ATGATCGCGGCCTACCAGGCGCGCTGCCAGGCGCGCGTCGATGCCGCCCTGGACGCCCTGTTCGTCGCTCCC
CGCGAAGAACTGCAACGCCTCTACGAGGCCATGCGCTACAGCGTGATGAACGGTGGCAAGCGAGTTCGCCCG
CTGCTCGCCTACGCCGCCTGCGAGGCCCTCGGCGGTGCGCCGCAGCGCGCCGACGCCGCGGCCTGCGCAGTG
GAGCTGATCCATGCCTACTCGCTGGTCCACGACGACCTGCCGGCGATGGACGACGACGACCTGCGCCGTGGC
CAGCCGACCACCCACCGGGCCTTCGACGAAGCCACCGCGATCCTCGCCGCCGACGGCTTGCAGGCGCTAGCC
TTCGAAGTGCTCGCCGACACCCGGCGCAATCCACAGGAACATGCCGTCTGTCTGGAAATGCTCACCCGCCTG
GCGCGCGCCGCAGGCTCCGCCGGCATGGTCGGCGGCCAGGCGATCGACCTCGGCTCGGTCGGCGTGGCCCTC
GACCAGGCGGCCCTGGAAGTCATGCACCGGCACAAGACCGGCGCGCTGATCGAAGCCAGCGTGCGCCTCGGC
GCCCTCGCCAGCGGTCGCGCCGAGCCCGCCGCGCTGGCCGCCCTGGAACGCTACGCCGAAGCGATCGGCCTG
GCCTTCCAGGTGCAGGACGACATCCTCGACGTGGAAAGCGACACCGCCACCCTCGGCAAGACCCAGGGCAAG
GACCAGGCGCACAACAAGCCGACCTATCCCGCCCTGCTCGGCCTGGAGGCCGCCAAAGGCTATGCCCTGGAG
CTGCGCGACCTGGCCCTGGCCGCCCTCGACGGTTTTCCGCCGAGCGCCGACCCGCTGCGCCAACTGGCCCGC
TACATCGTCGAGCGACGCAACTGA
Translation:
MIAAYQARCQARVDAALDALFVAPREELQRLYEAMRYSVMNGGKRVRPLLAYAACEALGGAPQRADAAACAV
ELIHAYSLVHDDLPAMDDDDLRRGQPTTHRAFDEATAILAADGLQALAFEVLADTRRNPQEHAVCLEMLTRL
ARAAGSAGMVGGQAIDLGSVGVALDQAALEVMHRHKTGALIEASVRLGALASGRAEPAALAALERYAEAIGL
AFQVQDDILDVESDTATLGKTQGKDQAHNKPTYPALLGLEAAKGYALELRDLALAALDGFPPSADPLRQLAR
YIVERRN*
AnnotationID:2717GeneID:2709
AnnotatorUID: urbach
Modification Date/Time: 2004-10-05 18:06:48
Gene Name:ispA
Confidence Code:2
GeneProduct:geranyltranstransferase
Cell Localization:(1) Cytoplasmic
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0142,pfam00348,KOG0776
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gb|AAC73524.1|  (AE000148) geranyltranstransferase
(farnesyldiphosphate synthase) [Escherichia coli K12]
Length: 306
PctIdentity: 50.98
PctSimilarity: 61.43
Gaps: 18
BitScore: 672.0
Structural Features:
gnl|CDD|10017 COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Length = 322
Score =  233 bits (596), Expect = 3e-62
Identities = 125/334 (37%), Positives = 160/334 (47%), Gaps = 52/334 (15%)
Genomic Context:
Comment:
ReferenceID:5421
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22566
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34628
Author/Investigator(s): Fujisaki S, Hara H, Nishimura Y, Horiuchi K, Nishino T.
Title: Cloning and nucleotide sequence of the ispA gene responsible for farnesyl diphosphate synthase activity in Escherichia coli.
PubMed: 2089044
MedLine:
Source:
J Biochem (Tokyo). 1990 Dec;108(6):995-1000.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=91210228&dopt=Citation
Homologs By Global Alignment
Gene ID:2709

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4435 PA4043_tr translation of PA4043 295 99.66 99.99 0 1471.0
128843 gb|AAG07430.1|AE004821_3 (AE004821) geranyltranstransferase [Pseudomonas aeruginosa PAO1] 295 99.66 99.99 0 1471.0
128844 gb|AAN66155.1|AE016243_7 (AE016776) geranyltranstransferase [Pseudomonas putida KT2440] 295 78.30 84.74 0 1138.0
128845 gb|AAO54241.1| (AE016858) geranyltranstransferase [Pseudomonas syringae pv. tomato str. DC3000] 295 76.94 85.08 0 1109.0
128860 emb|CAE43072.1| (BX640419) probable geranyltranstransferase [Bordetella pertussis] [Bordetella pertussis Tohama I] 313 53.99 62.61 28 687.0
GC ORFID: 45711How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4043Glimmer Score:
Start: 3953239Stop: 3954126
Length: 888
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4043 translation of PA4043Homolog Bit Score 571.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3640 (ORF: BLASTX 428.0), t_PA4043 (ORF: GLIMMER)
GC ORF Sequence
ATGATCGCGGCCTACCAGGCGCGCTGCCAGGCGCGCGTCGATGCCGCCCTGGACGCCCTGTTCGTCGCTCCC
CGCGAAGAACTGCAACGCCTCTACGAGGCCATGCGCTACAGCGTGATGAACGGTGGCAAGCGAGTTCGCCCG
CTGCTCGCCTACGCCGCCTGCGAGGCCCTCGGCGGTGCGCCGCAGCGCGCCGACGCCGCGGCCTGCGCAGTG
GAGCTGATCCATGCCTACTCGCTGGTCCACGACGACCTGCCGGCGATGGACGACGACGACCTGCGCCGTGGC
CAGCCGACCACCCACCGGGCCTTCGACGAAGCCACCGCGATCCTCGCCGCCGACGGCTTGCAGGCGCTAGCC
TTCGAAGTGCTCGCCGACACCCGGCGCAATCCACAGGAACATGCCGTCTGTCTGGAAATGCTCACCCGCCTG
GCGCGCGCCGCAGGCTCCGCCGGCATGGTCGGCGGCCAGGCGATCGACCTCGGCTCGGTCGGCGTGGCCCTC
GACCAGGCGGCCCTGGAAGTCATGCACCGGCACAAGACCGGCGCGCTGATCGAAGCCAGCGTGCGCCTCGGC
GCCCTCGCCAGCGGTCGCGCCGAGCCCGCCGCGCTGGCCGCCCTGGAACGCTACGCCGAAGCGATCGGCCTG
GCCTTCCAGGTGCAGGACGACATCCTCGACGTGGAAAGCGACACCGCCACCCTCGGCAAGACCCAGGGCAAG
GACCAGGCGCACAACAAGCCGACCTATCCCGCCCTGCTCGGCCTGGAGGCCGCCAAAGGCTATGCCCTGGAG
CTGCGCGACCTGGCCCTGGCCGCCCTCGACGGTTTTCCGCCGAGCGCCGACCCGCTGCGCCAACTGGCCCGC
TACATCGTCGAGCGACGCAACTGA