ViewGene
Locus Name:
GeneID:
Location:

GeneID:2708
TrivialName: PA14_21180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21180
PAO1 Ortholog Locus:PA3312
Sequence Length:891
Protein Length:296
Start: 1831413
Stop: 1832303
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06700.1|AE004753_8 (AE004753) probable 3-hydroxyisobutyrate dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 296/296 (100%), Positives = 296/296 (100%)
Sequence:
ATGTCCGCTTCCCTGCCTTCCCTTGCCTTCGCCGGTCTCGGCCTGATGGGCGTGCCCATGTGCCGCCGGCTG
CTGGCCGCCGGCTATCCGCTGGCGGTGTGGAACCGTTCGCCGGGCAAACGCGAGTTGCTCGCGGCCGAGGGC
GCGAAAGCCGTGGAGGTCCCGGCCGAACTGGCCGCCGACGCGGAAATCCTGATGCTTTGCCTGGCCGATACC
GCGGCGGTGCGCGAAGTGGTGTTCGGCGCCGGCGGCATCGTCGAGAACGCCAGGCCCGGGCAGTTGCTGGTG
GATTTCTCCAGCGCCGAGCCGGCCGCCACCCGCGAGATGGCCGCCGAGCTGGAGGCGCGCTGCGGCGTGCGC
TGGGTCGACGCGCCGGTCTCCGGCGGCACGCCGGGCGCGGAAAGCGGCAGCCTGGCGATCATGGCCGGCGGA
CGCGCAGCGGATATCGAGCGCCTGCGGCCGGTCCTCTCCCGGCTCGGCCAGCGCCTGACGCGCATGGGCGAG
GTGGGCGCCGGGCAGGTGACCAAGGTCTGCAACCAGATGATCGTTGCCTGCAACGCCCTGGTGATCGCCGAA
GTGGTGGCGCTGGCGGAGCGGGCCGGGGTCGACGCCAGCCTGGTCGCTCCGGCGCTGGCGGGCGGCTTCGCC
GACTCGAAGCCGTTGCAGATCCTCGCCCCGCAAATGGCCGAGAGCCGTTACGAGCCGGTCAAGTGGCACGTA
CGGACCCTGCTCAAGGATCTCGATACCGCGGTGAAGCTGTCCCGCGAGCAAGGCGCGGCCACCCCGATGAGC
GGGTTGGCCGCGCAGTTGATGCGTCTGCACGGCAGCCAGGGCTATCTCGAACGCGATCCGGCGACCCTGGTG
GAGCAATACCGGACCGCCGTCGAGTGA
Translation:
MSASLPSLAFAGLGLMGVPMCRRLLAAGYPLAVWNRSPGKRELLAAEGAKAVEVPAELAADAEILMLCLADT
AAVREVVFGAGGIVENARPGQLLVDFSSAEPAATREMAAELEARCGVRWVDAPVSGGTPGAESGSLAIMAGG
RAADIERLRPVLSRLGQRLTRMGEVGAGQVTKVCNQMIVACNALVIAEVVALAERAGVDASLVAPALAGGFA
DSKPLQILAPQMAESRYEPVKWHVRTLLKDLDTAVKLSREQGAATPMSGLAAQLMRLHGSQGYLERDPATLV
EQYRTAVE*
AnnotationID:2716GeneID:2708
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 08:08:39
Gene Name:
Confidence Code:3
GeneProduct:putative 3-hydroxyisobutyrate dehydrogenase
Cell Localization:()
Synonyms:PA3312
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2084
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66768.1|AE016305_3 (AE016778) 3-hydroxyisobutyrate dehydrogenase family protein
           [Pseudomonas putida KT2440]
          Length = 295

 Score =  454 bits (1168), Expect = e-127
 Identities = 226/295 (76%), Positives = 254/295 (86%)

>emb|CAE32939.1| (BX640444) probable dehydrogenase [Bordetella bronchiseptica]
          Length = 298

 Score =  237 bits (604), Expect = 7e-62
 Identities = 140/288 (48%), Positives = 179/288 (62%), Gaps = 23/288 (7%)








 
Structural Features:
COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase 
and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
CD-Length = 286 residues,  99.7% aligned
Score =  253 bits (648), Expect = 2e-68
Identities = 124/287 (43%), Positives = 181/287 (63%), Gaps = 3/287 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5419




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22564




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32245




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2708_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2708
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4434
                           PA3312_tr
                           translation of PA3312
                           296
                           99.99
                           99.99
                           0
                           1472.0
     

     
     
128834
                           gb|AAG06700.1|AE004753_8
                           (AE004753) probable 3-hydroxyisobutyrate dehydrogenase [Pseudomonas aeruginosa PAO1]
                           296
                           99.99
                           99.99
                           0
                           1472.0
     

     
     
128835
                           gb|AAN66768.1|AE016305_3
                           (AE016778) 3-hydroxyisobutyrate dehydrogenase family protein [Pseudomonas putida KT2440]
                           296
                           76.35
                           85.81
                           1
                           1168.0
     

     
     
128836
                           dbj|BAC51359.1|
                           (AP005957) oxidoreductase [Bradyrhizobium japonicum USDA 110]
                           316
                           44.62
                           59.81
                           23
                           672.0
     

     
     
128837
                           emb|CAE32939.1|
                           (BX640444) probable dehydrogenase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           324
                           44.13
                           56.17
                           54
                           622.0
     

     






      

          
GC ORFID: 45710How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3312Glimmer Score: 

          
Start: 3122518Stop: 3121628

          
Length: 891


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3312 translation of PA3312Homolog Bit Score 571.0

          
Other Homologs:  t_PA3312 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGCTTCCCTGCCTTCCCTTGCCTTCGCCGGTCTCGGCCTGATGGGCGTGCCCATGTGCCGCCGGCTG 
CTGGCCGCCGGCTATCCGCTGGCGGTGTGGAACCGTTCGCCGGGCAAACGCGAGTTGCTCGCGGCCGAGGGC 
GCGAAAGCCGTGGAGGTCCCGGCCGAACTGGCCGCCGACGCGGAAATCCTGATGCTTTGCCTGGCCGATACC 
GCGGCGGTGCGCGAAGTGGTGTTCGGCGCCGGCGGCATCGTCGAGAACGCCAGGCCCGGGCAGTTGCTGGTG 
GATTTCTCCAGCGCCGAGCCGGCCGCCACCCGCGAGATGGCCGCCGAGCTGGAGGCGCGCTGCGGCGTGCGC 
TGGGTCGACGCGCCGGTCTCCGGCGGCACGCCGGGCGCGGAAAGCGGCAGCCTGGCGATCATGGCCGGCGGA 
CGCGCAGCGGATATCGAGCGCCTGCGGCCGGTCCTCTCCCGGCTCGGCCAGCGCCTGACGCGCATGGGCGAG 
GTGGGCGCCGGGCAGGTGACCAAGGTCTGCAACCAGATGATCGTTGCCTGCAACGCCCTGGTGATCGCCGAA 
GTGGTGGCGCTGGCGGAGCGGGCCGGGGTCGACGCCAGCCTGGTCGCTCCGGCGCTGGCGGGCGGCTTCGCC 
GACTCGAAGCCGTTGCAGATCCTCGCCCCGCAAATGGCCGAGAGCCGTTACGAGCCGGTCAAGTGGCACGTA 
CGGACCCTGCTCAAGGATCTCGATACCGCGGTGAAGCTGTCCCGCGAGCAAGGCGCGGCCACCCCGATGAGC 
GGGTTGGCCGCGCAGTTGATGCGTCTGCACGGCAGCCAGGGCTATCTCGAACGCGATCCGGCGACCCTGGTG 
GAGCAATACCGGACCGCCGTCGAGTGA