ViewGene
Locus Name:
GeneID:
Location:

GeneID:2707
TrivialName: PA14_21720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21720
PAO1 Ortholog Locus:PA3269
Sequence Length:855
Protein Length:284
Start: 1888121
Stop: 1888975
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06657.1|AE004749_6 (AE004749) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 281/284 (98%), Positives = 282/284 (99%)
Sequence:
GTGCCGGACGAGACGAGCGGAGAACACACGCATTTCTGGCGCGCCGCCGAACTGGGCGGCGTCGAACTTCTG
CACGCGCGCTATGTGGAGCAGCGCTTCGCGCCGCACGTGCACAGCAGCTTCGCCCTGGTCATCATCGAGCAG
GGCGCGCAGCGCTTCCGCCATCGTGGCGGCGAGCACCTGGCCCCGCTGGGCAGCATGGTGCTGATCAACCCC
GACGAAGTGCACACCGGCTCCAAGGCCCATGATGCCGGTTGGCTCTATCGCGGCTACTACCCGGAAATGGAG
CAGATCGACGGGATTCTCGACGAGCTGGAAATCCATCATGGCGGCGTGCCGCGTTTCGCCGACAGCGTGATC
CACGACCAGCCCCTGGCACGCGCCTTCGTCCACTTGCACCGCCTGCTGGCCGAGCATGCCGGCAGCCTGGAA
ACCCAGACCCGCTGGCGCGAGACGATGCTCGCCCTGTTCCGTCGCCACGCCCGCCTGCCAGAAGCGCCGAAG
GCCGGGCAGGAGCCGTTGGCGGTGGCCCGCGCCCGCGAACTGCTGGCGGCGCGGTTGCTCGATCCGCCTTCG
CTGGAGGAACTGGCGGCGGCGGTCAATCTGTCCCCGTTCCATTTTGCCCGGGTCTTCCGTCGCGCCACCGGC
ATGCCGCCCCACGCCTGGCTCAGGCAGCGCCGCCTGGAGCAGGCCAGGGCACTGCTCAAGAGCGGCCGGGCG
CCGCTGGAGGTGGCCCTGGAGCTGGGCTTCGCCGACCAGAGCCACCTCGGTCGCCAGTTCAAGCAGGCCTAC
GGGGTGGCACCGGGTGAATACCGCTCGGCCTGCGCGCGCTCGTCCTTGACGACATACGAATAA
Translation:
MPDETSGEHTHFWRAAELGGVELLHARYVEQRFAPHVHSSFALVIIEQGAQRFRHRGGEHLAPLGSMVLINP
DEVHTGSKAHDAGWLYRGYYPEMEQIDGILDELEIHHGGVPRFADSVIHDQPLARAFVHLHRLLAEHAGSLE
TQTRWRETMLALFRRHARLPEAPKAGQEPLAVARARELLAARLLDPPSLEELAAAVNLSPFHFARVFRRATG
MPPHAWLRQRRLEQARALLKSGRAPLEVALELGFADQSHLGRQFKQAYGVAPGEYRSACARSSLTTYE*
AnnotationID:2715GeneID:2707
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 18:06:12
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA3269
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342,pfam02311,COG2207
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67996.1|AE016432_5 (AE016783) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 281

 Score =  377 bits (969), Expect = e-104
 Identities = 180/273 (65%), Positives = 212/273 (77%)

>gb|AAO07518.1|AE016810_21 (AE016810) AraC-type DNA-binding domain-containing protein [Vibrio
           vulnificus CMCP6]
          Length = 276

 Score =  197 bits (500), Expect = 8e-50
 Identities = 113/272 (41%), Positives = 153/272 (56%), Gaps = 7/272 (2%)

>gb|AAF96897.1| (AE004427) transcriptional regulator, AraC/XylS family [Vibrio
           cholerae]
          Length = 277

 Score =  191 bits (484), Expect = 5e-48
 Identities = 112/268 (41%), Positives = 149/268 (55%), Gaps = 8/268 (2%)






 
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues, 100.0% aligned
Score = 94.9 bits (236), Expect = 1e-20
Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 1/84 (1%)

pfam02311, AraC_binding, AraC-like ligand binding domain
CD-Length = 140 residues, 100.0% aligned
Score = 86.7 bits (214), Expect = 3e-18
Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 6/144 (4%)

COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
CD-Length = 127 residues,  98.4% aligned
Score = 93.0 bits (230), Expect = 4e-20
Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 1/125 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14653




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22562




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32274




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2707_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2707
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4433
                           PA3269_tr
                           translation of PA3269
                           284
                           98.94
                           99.29
                           0
                           1471.0
     

     
     
128827
                           gb|AAG06657.1|AE004749_6
                           (AE004749) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           284
                           98.59
                           99.29
                           0
                           1468.0
     

     
     
128828
                           gb|AAN67996.1|AE016432_5
                           (AE016783) transcriptional regulator, AraC family [Pseudomonas putida KT2440]
                           284
                           63.38
                           74.64
                           3
                           960.0
     

     
     
128829
                           gb|AAQ62025.1|
                           (AE016925) transcriptional regulator [Chromobacterium violaceum ATCC 12472]
                           291
                           41.58
                           56.70
                           21
                           546.0
     

     
     
128832
                           gb|AAF96897.1|
                           (AE004427) transcriptional regulator, AraC/XylS family [Vibrio cholerae O1 biovar eltor str. N16961]
                           298
                           39.93
                           53.02
                           35
                           490.0
     

     






      

          
GC ORFID: 45709How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3269Glimmer Score: 

          
Start: 3065810Stop: 3064956

          
Length: 855


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3269 translation of PA3269Homolog Bit Score 571.0

          
Other Homologs:  t_PA3269 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCGGACGAGACGAGCGGAGAACACACGCATTTCTGGCGCGCCGCCGAACTGGGCGGCGTCGAACTTCTG 
CACGCGCGCTATGTGGAGCAGCGCTTCGCGCCGCACGTGCACAGCAGCTTCGCCCTGGTCATCATCGAGCAG 
GGCGCGCAGCGCTTCCGCCATCGTGGCGGCGAGCACCTGGCCCCGCTGGGCAGCATGGTGCTGATCAACCCC 
GACGAAGTGCACACCGGCTCCAAGGCCCATGATGCCGGTTGGCTCTATCGCGGCTACTACCCGGAAATGGAG 
CAGATCGACGGGATTCTCGACGAGCTGGAAATCCATCATGGCGGCGTGCCGCGTTTCGCCGACAGCGTGATC 
CACGACCAGCCCCTGGCACGCGCCTTCGTCCACTTGCACCGCCTGCTGGCCGAGCATGCCGGCAGCCTGGAA 
ACCCAGACCCGCTGGCGCGAGACGATGCTCGCCCTGTTCCGTCGCCACGCCCGCCTGCCAGAAGCGCCGAAG 
GCCGGGCAGGAGCCGTTGGCGGTGGCCCGCGCCCGCGAACTGCTGGCGGCGCGGTTGCTCGATCCGCCTTCG 
CTGGAGGAACTGGCGGCGGCGGTCAATCTGTCCCCGTTCCATTTTGCCCGGGTCTTCCGTCGCGCCACCGGC 
ATGCCGCCCCACGCCTGGCTCAGGCAGCGCCGCCTGGAGCAGGCCAGGGCACTGCTCAAGAGCGGCCGGGCG 
CCGCTGGAGGTGGCCCTGGAGCTGGGCTTCGCCGACCAGAGCCACCTCGGTCGCCAGTTCAAGCAGGCCTAC 
GGGGTGGCACCGGGTGAATACCGCTCGGCCTGCGCGCGCTCGTCCTTGACGACATACGAATAA