ViewGene
Locus Name:
GeneID:
Location:

GeneID:2705
TrivialName: PA14_51630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51630
PAO1 Ortholog Locus:PA0978
Sequence Length:846
Protein Length:281
Start: 4588146
Stop: 4588991
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP82949.1| (AY273870) putative transposase [Pseudomonas aeruginosa]
Identities = 278/280 (99%), Positives = 279/280 (99%)
Sequence:
CTGATAGACCAGTTGAGTGAGCAGGAGTCGGTGGAAGTGGTCTGCTCAGCTTTCGATGTGGCGCGGTCTTGC
TACTACGTCCACCGTCTTCGACGGCGGCGTGTCGATGCTCGCCGCGTGGCGCTACGCAGCCAAGTCAACCAG
TTGTTCAGCCAGAGTCGGGGCTCGGCCGGCAGCCGCAGCATTCTGGGCATGCTGCGCGAAGAGGGCGTGACC
ATCGGCCGTTTCCGAGTGCGTCGGTTGATGCGTGAGCTGGGCCTGGTCAGCAAGCAACCGGGCTCGCACGCC
TACAAACAGGCCACGGTTGAGCGGCCGGATATCCCGAATCGGCTGAACCGCGAATTCGCGACCGAGCATCCC
AATCAGGTGTGGTGTGGCGACATCACCTACGTCTGGGCGCAAGGCCGTTGGCACTACCTGGCCGCGGTGCTG
GATCTGCTGATCGGCTGGGCGTTCTCGGCCAAGCCGGATGCCGAACTGGTGATCAAGGCCCTGGACATGGCC
TACGAACAGCGCGGCAGGCCACAGCAGGTGCTGTTCCATTCAGACCAGGGCAGCCAGTACGCCAGCCGCCTG
TTTCGGCAACGGCTCTGGCGCTATCGGATGCAGCAGAGCATGAGCCGTCGGGGGAATTGCTGGGATAACTCG
CCGATGGAGCGCCTGTTCCGCAGTCTGAAGTCGGAGTGGGTCCCGTCAACGGGTTACCTGACGGCGCAGGAG
GCCCAACGGGACATCAGTCATTACTTGATGCACCGCTACAACTGGATCAGGCCGCATCAATTCAACGACGGG
TTACCACCTGCGGTGGCCGAAGAAAAACTCAACCCACTGTCCGGGATGGGTTGA
Translation:
MIDQLSEQESVEVVCSAFDVARSCYYVHRLRRRRVDARRVALRSQVNQLFSQSRGSAGSRSILGMLREEGVT
IGRFRVRRLMRELGLVSKQPGSHAYKQATVERPDIPNRLNREFATEHPNQVWCGDITYVWAQGRWHYLAAVL
DLLIGWAFSAKPDAELVIKALDMAYEQRGRPQQVLFHSDQGSQYASRLFRQRLWRYRMQQSMSRRGNCWDNS
PMERLFRSLKSEWVPSTGYLTAQEAQRDISHYLMHRYNWIRPHQFNDGLPPAVAEEKLNPLSGMG*
AnnotationID:2713GeneID:2705
AnnotatorUID: danlee
Modification Date/Time: 2005-10-04 17:05:35
Gene Name:
Confidence Code:4
GeneProduct:possible transposase
Cell Localization:()
Synonyms:PA0978, RS04
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00665, COG2801
Secondary Functional Category(ies):Putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00665, rve, Integrase core domain. Score: 107, 2e-24
COG2801, Tra5, Transposase and inactivated derivatives. Score: 80.4, 2e-16






   
Genomic Context:






   
Comment:


















    ReferenceID:14651




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22558




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32075




  
Author/Investigator(s):
        He J, Baldini RL, Deziel E, Saucier M, Zhang Q, Liberati NT, Lee D, Urbach J, Goodman HM, Rahme LG.





  
Title:
        The broad host range pathogen Pseudomonas aeruginosa strain PA14 carries two pathogenicity islands harboring plant and animal virulence genes.




  
PubMed:
        14983043


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 2004 Feb 24;101(8):2530-5.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2705
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
128707
                           gb|AAP82949.1|
                           (AY273870) putative transposase [Pseudomonas aeruginosa]
                           281
                           98.93
                           99.28
                           1
                           1470.0
     

     
     
4430
                           PA0978_tr
                           translation of PA0978
                           285
                           93.68
                           94.73
                           14
                           1417.0
     

     
     
4431
                           PA1938_tr
                           translation of PA1938
                           285
                           93.33
                           94.03
                           16
                           1405.0
     

     
     
128708
                           gb|AAG04367.1|AE004531_4
                           (AE004531) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           285
                           93.33
                           94.73
                           14
                           1414.0
     

     
     
128709
                           gb|AAG05326.1|AE004620_5
                           (AE004620) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           285
                           92.98
                           94.03
                           16
                           1402.0
     

     






      

          
GC ORFID: 45707How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RS04Glimmer Score: 

          
Start: 365761Stop: 364916

          
Length: 846


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RS04 280 Homolog: PAO978 / Putative transposase; recombination-related / P. aeruginosa / PAO1 (AAG04367) translation of RS04Homolog Bit Score 572.0

          
Other Homologs:  t_PA0978 (ORF: BLASTX 549.0), t_PA1938 (ORF: BLASTX 544.0), psyr_15may02_Scaffold2_revised_gene3488 (ORF: BLASTX 216.0), psyr_15may02_Scaffold3_revised_gene4323 (ORF: BLASTX 139.0), psyr_15may02_Scaffold13_revised_gene2235 (ORF: BLASTX 139.0), psyr_15may02_Scaffold1_revised_gene1122 (ORF: BLASTX 108.0), t_RS04 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGATAGACCAGTTGAGTGAGCAGGAGTCGGTGGAAGTGGTCTGCTCAGCTTTCGATGTGGCGCGGTCTTGC 
TACTACGTCCACCGTCTTCGACGGCGGCGTGTCGATGCTCGCCGCGTGGCGCTACGCAGCCAAGTCAACCAG 
TTGTTCAGCCAGAGTCGGGGCTCGGCCGGCAGCCGCAGCATTCTGGGCATGCTGCGCGAAGAGGGCGTGACC 
ATCGGCCGTTTCCGAGTGCGTCGGTTGATGCGTGAGCTGGGCCTGGTCAGCAAGCAACCGGGCTCGCACGCC 
TACAAACAGGCCACGGTTGAGCGGCCGGATATCCCGAATCGGCTGAACCGCGAATTCGCGACCGAGCATCCC 
AATCAGGTGTGGTGTGGCGACATCACCTACGTCTGGGCGCAAGGCCGTTGGCACTACCTGGCCGCGGTGCTG 
GATCTGCTGATCGGCTGGGCGTTCTCGGCCAAGCCGGATGCCGAACTGGTGATCAAGGCCCTGGACATGGCC 
TACGAACAGCGCGGCAGGCCACAGCAGGTGCTGTTCCATTCAGACCAGGGCAGCCAGTACGCCAGCCGCCTG 
TTTCGGCAACGGCTCTGGCGCTATCGGATGCAGCAGAGCATGAGCCGTCGGGGGAATTGCTGGGATAACTCG 
CCGATGGAGCGCCTGTTCCGCAGTCTGAAGTCGGAGTGGGTCCCGTCAACGGGTTACCTGACGGCGCAGGAG 
GCCCAACGGGACATCAGTCATTACTTGATGCACCGCTACAACTGGATCAGGCCGCATCAATTCAACGACGGG 
TTACCACCTGCGGTGGCCGAAGAAAAACTCAACCCACTGTCCGGGATGGGTTGA