ViewGene
Locus Name:
GeneID:
Location:

GeneID:2704
TrivialName: PA14_57970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57970
PAO1 Ortholog Locus:PA4465
Sequence Length:861
Protein Length:286
Start: 5158820
Stop: 5159680
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07853.1|AE004860_9 (AE004860) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 286/286 (100%), Positives = 286/286 (100%)
Sequence:
ATGCGCCTGATCATCGTCAGCGGCCGCTCGGGCTCGGGCAAGAGCACCGCCCTGAACGTCCTCGAAGACAAC
GGCTTCTATTGCATCGACAACCTTCCCGCCAGCCTGCTTCCCGACCTGGCGCAGCGCGCCCTGTTGCACACG
GAGCTACTGCAGCCACAGGTGGCGGTGTCGATCGACGCCCGCAACCTGCCCAGCCAGTTGCAGCGCTTCCCC
GAACTGTTGCAGGAAGTGCGGGACAACCACATCAACTGCGATGTGCTGTATCTCGACGCCGACGACGAGACG
CTGCTCAAACGATTCTCGGAAACCCGCCGGCGCCACCCGCTGACCACCGACACCCGTTCGCTGGCGGAGGCG
ATTGGCGACGAGAGCCAATTGCTCGGACCGATCGCCGACCTCGCCGACCTGAAGCTGGACACCACCAGCCTC
AACCTCTATCAGTTGCGCGACACCATCAAACTGCGCCTGTTGAACAAGCCGGAACCCGGCACCGCGTTCCTC
GTCGAATCCTTTGGCTTCAAGCGCGGCATGCCAGTCGACGCCGACCTGGTGTTCGATGTGCGCTGCCTGCCG
AACCCCTACTGGAAGCCCGAGTTGCGCGATCATTCGGGGCTGGAGCCGGAAGTCCGCGAGTATCTGGCCGCC
CAGCCGGACGTCGAGGAAATGTACCAGGACATCGTCGGCTACCTGAACAAATGGTTGCCGCGCTTCGCCGCC
AGTAACCGCTCATATGTAACAGTTGCGATAGGCTGTACCGGCGGGCACCATCGTTCGGTCTACCTCGCCGAG
CGGATTGGCGCTGCACTCAGGGATTCCCTGAAGAACGTGCAGATTCGCCACCGCGATCTCAGCAGCTAG
Translation:
MRLIIVSGRSGSGKSTALNVLEDNGFYCIDNLPASLLPDLAQRALLHTELLQPQVAVSIDARNLPSQLQRFP
ELLQEVRDNHINCDVLYLDADDETLLKRFSETRRRHPLTTDTRSLAEAIGDESQLLGPIADLADLKLDTTSL
NLYQLRDTIKLRLLNKPEPGTAFLVESFGFKRGMPVDADLVFDVRCLPNPYWKPELRDHSGLEPEVREYLAA
QPDVEEMYQDIVGYLNKWLPRFAASNRSYVTVAIGCTGGHHRSVYLAERIGAALRDSLKNVQIRHRDLSS*
AnnotationID:2712GeneID:2704
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 07:07:57
Gene Name:
Confidence Code:3
GeneProduct:putative ATP kinase
Cell Localization:()
Synonyms:PA4465
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1660,pfam03668
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL22192.1| (AE008853) putative P-loop-containing kinase [Salmonella
           typhimurium LT2]
          Length = 284

 Score =  267 bits (682), Expect = 6e-71
 Identities = 143/287 (49%), Positives = 186/287 (64%), Gaps = 11/287 (3%)

>gb|AAO09207.1|AE016799_105 (AE016799) Predicted P-loop-containing kinase [Vibrio vulnificus
           CMCP6]
          Length = 287

 Score =  251 bits (642), Expect = 3e-66
 Identities = 133/286 (46%), Positives = 190/286 (66%), Gaps = 7/286 (2%)






 
Structural Features:
COG1660, Predicted P-loop-containing kinase
CD-Length = 286 residues,  99.3% aligned
Score =  385 bits (991), Expect = 6e-108
Identities = 152/287 (52%), Positives = 202/287 (70%), Gaps = 5/287 (1%)

pfam03668, ATP_bind_2, P-loop ATPase protein family. 
CD-Length = 284 residues,  98.9% aligned
Score =  281 bits (721), Expect = 1e-76
Identities = 127/284 (44%), Positives = 174/284 (61%), Gaps = 3/284 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5411




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22556




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31505




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2704_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2704
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4429
                           PA4465_tr
                           translation of PA4465
                           286
                           99.99
                           99.99
                           0
                           1474.0
     

     
     
128655
                           gb|AAG07853.1|AE004860_9
                           (AE004860) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           286
                           99.99
                           99.99
                           0
                           1474.0
     

     
     
128656
                           emb|CAD43115.1|
                           (AJ496594) hypothetical protein [Pseudomonas stutzeri]
                           286
                           84.26
                           91.25
                           1
                           1261.0
     

     
     
128658
                           gb|AAN66574.1|AE016285_12
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           286
                           81.81
                           89.86
                           2
                           1229.0
     

     
     
128659
                           emb|CAA07605.1|
                           (AJ007699) ORF284; hypothetical protein [Pseudomonas putida]
                           286
                           81.46
                           89.86
                           2
                           1226.0
     

     






      

          
GC ORFID: 45706How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4465Glimmer Score: 

          
Start: 4422499Stop: 4423359

          
Length: 861


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4465 translation of PA4465Homolog Bit Score 572.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5550 (ORF: BLASTX 478.0), t_PA4465 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCTGATCATCGTCAGCGGCCGCTCGGGCTCGGGCAAGAGCACCGCCCTGAACGTCCTCGAAGACAAC 
GGCTTCTATTGCATCGACAACCTTCCCGCCAGCCTGCTTCCCGACCTGGCGCAGCGCGCCCTGTTGCACACG 
GAGCTACTGCAGCCACAGGTGGCGGTGTCGATCGACGCCCGCAACCTGCCCAGCCAGTTGCAGCGCTTCCCC 
GAACTGTTGCAGGAAGTGCGGGACAACCACATCAACTGCGATGTGCTGTATCTCGACGCCGACGACGAGACG 
CTGCTCAAACGATTCTCGGAAACCCGCCGGCGCCACCCGCTGACCACCGACACCCGTTCGCTGGCGGAGGCG 
ATTGGCGACGAGAGCCAATTGCTCGGACCGATCGCCGACCTCGCCGACCTGAAGCTGGACACCACCAGCCTC 
AACCTCTATCAGTTGCGCGACACCATCAAACTGCGCCTGTTGAACAAGCCGGAACCCGGCACCGCGTTCCTC 
GTCGAATCCTTTGGCTTCAAGCGCGGCATGCCAGTCGACGCCGACCTGGTGTTCGATGTGCGCTGCCTGCCG 
AACCCCTACTGGAAGCCCGAGTTGCGCGATCATTCGGGGCTGGAGCCGGAAGTCCGCGAGTATCTGGCCGCC 
CAGCCGGACGTCGAGGAAATGTACCAGGACATCGTCGGCTACCTGAACAAATGGTTGCCGCGCTTCGCCGCC 
AGTAACCGCTCATATGTAACAGTTGCGATAGGCTGTACCGGCGGGCACCATCGTTCGGTCTACCTCGCCGAG 
CGGATTGGCGCTGCACTCAGGGATTCCCTGAAGAACGTGCAGATTCGCCACCGCGATCTCAGCAGCTAG