ViewGene
Locus Name:
GeneID:
Location:

GeneID:2703
TrivialName: PA14_11700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11700
PAO1 Ortholog Locus:PA4030
Sequence Length:831
Protein Length:276
Start: 1014609
Stop: 1013779
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07417.1|AE004820_2 (AE004820) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 276/276 (100%), Positives = 276/276 (100%)
Sequence:
ATGTGGTCGTTCCGCGCCTGGCGGCGCCGGCGCCTGCTGGCGCGCCACCCGGTGGCCGAAGAGCTCTGGCAG
CGGGTACGCCGGCACCTGCCGATCCTCGACGGCCTGGACGCCGACGAGGACCGCCGCCTGCGCGAGCGGGCC
GTGCTGTTTCTCGCCGACAAGCACCTGACCGCACTCGCCGGCGTCGATCTCGACGACTTCGGCCGCCTGCTG
CTGGCGGCGCAGGCGCAACTGCCGCTGTTGCACCTGCCGGAGCTGAACTGGTACCAGGGCTTCCACGAGCTG
GTGCTGTATCCCGACGATTTCGTCAGCCCGCAGAAACACCGCGACGCCAGCGGCGTAGTCCATGAGTTCGAC
GACGAACGCAGCGGCGAGACCTCCCTGCAAGGGCCGGTGGTCCTGGCCTGGCCCGGCGTCGTCGGCGGGGGT
GGCTGGGATGCCTACAACCTGGTGATCCACGAACTGGCGCACAAGCTGGACATGCTCAACGGCGACGCCAAC
GGCCTGCCGCCGCTGCACGCCGGCATGCGCATCGGCGACTGGGCGAGCGCCATGCAGGCCGCCTACGACGAG
ATGAACGCCCTGCTCGACCGCGATCCCGACGCGCAGACCGCCATCGATCCCTATGCGGCGGAAGATCCGGCG
GAGTTCTTCGCCGTTACCAGCGAGTATTTCTTCACCGCTCCGGATCTCCTCCACGAGGCCTATCCGGCGGTA
TACCGGCAGCTCCAGTTGTTCTACCGCCAGGACCCACTGCAACGCCTGCGCCGCCTGCAGGCCGAGCATCCG
GACTACCGCGAGGCGGCGGGCGACACGACTAACGGCTGA
Translation:
MWSFRAWRRRRLLARHPVAEELWQRVRRHLPILDGLDADEDRRLRERAVLFLADKHLTALAGVDLDDFGRLL
LAAQAQLPLLHLPELNWYQGFHELVLYPDDFVSPQKHRDASGVVHEFDDERSGETSLQGPVVLAWPGVVGGG
GWDAYNLVIHELAHKLDMLNGDANGLPPLHAGMRIGDWASAMQAAYDEMNALLDRDPDAQTAIDPYAAEDPA
EFFAVTSEYFFTAPDLLHEAYPAVYRQLQLFYRQDPLQRLRRLQAEHPDYREAAGDTTNG*
AnnotationID:2711GeneID:2703
AnnotatorUID: urbach
Modification Date/Time: 2004-09-29 16:04:57
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4030
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3228,pfam06167
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|12566 COG3228, COG3228, Uncharacterized protein conserved in bacteria
[Function unknown]
Length = 266
Score =  357 bits (917), Expect = 2e-99
Identities = 138/269 (51%), Positives = 169/269 (62%), Gaps = 4/269 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5409




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22554




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2703
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4428
                           PA4030_tr
                           translation of PA4030
                           276
                           99.99
                           99.99
                           0
                           1475.0
     

     
     
128643
                           gb|AAG07417.1|AE004820_2
                           (AE004820) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           276
                           99.99
                           99.99
                           0
                           1475.0
     

     
     
128644
                           gb|AAO54265.1|
                           (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           276
                           72.82
                           81.88
                           7
                           1095.0
     

     
     
128645
                           gb|AAN66166.1|AE016244_7
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           276
                           71.73
                           81.88
                           5
                           1087.0
     

     
     
128646
                           emb|CAD84530.1|
                           (BX321858) hypothetical protein [Nitrosomonas europaea ATCC 19718]
                           278
                           41.72
                           56.83
                           20
                           537.0
     

     






      

          
GC ORFID: 45705How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4030Glimmer Score: 

          
Start: 3939328Stop: 3940158

          
Length: 831


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4030 translation of PA4030Homolog Bit Score 572.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3628 (ORF: BLASTX 410.0), t_PA4030 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTGGTCGTTCCGCGCCTGGCGGCGCCGGCGCCTGCTGGCGCGCCACCCGGTGGCCGAAGAGCTCTGGCAG 
CGGGTACGCCGGCACCTGCCGATCCTCGACGGCCTGGACGCCGACGAGGACCGCCGCCTGCGCGAGCGGGCC 
GTGCTGTTTCTCGCCGACAAGCACCTGACCGCACTCGCCGGCGTCGATCTCGACGACTTCGGCCGCCTGCTG 
CTGGCGGCGCAGGCGCAACTGCCGCTGTTGCACCTGCCGGAGCTGAACTGGTACCAGGGCTTCCACGAGCTG 
GTGCTGTATCCCGACGATTTCGTCAGCCCGCAGAAACACCGCGACGCCAGCGGCGTAGTCCATGAGTTCGAC 
GACGAACGCAGCGGCGAGACCTCCCTGCAAGGGCCGGTGGTCCTGGCCTGGCCCGGCGTCGTCGGCGGGGGT 
GGCTGGGATGCCTACAACCTGGTGATCCACGAACTGGCGCACAAGCTGGACATGCTCAACGGCGACGCCAAC 
GGCCTGCCGCCGCTGCACGCCGGCATGCGCATCGGCGACTGGGCGAGCGCCATGCAGGCCGCCTACGACGAG 
ATGAACGCCCTGCTCGACCGCGATCCCGACGCGCAGACCGCCATCGATCCCTATGCGGCGGAAGATCCGGCG 
GAGTTCTTCGCCGTTACCAGCGAGTATTTCTTCACCGCTCCGGATCTCCTCCACGAGGCCTATCCGGCGGTA 
TACCGGCAGCTCCAGTTGTTCTACCGCCAGGACCCACTGCAACGCCTGCGCCGCCTGCAGGCCGAGCATCCG 
GACTACCGCGAGGCGGCGGGCGACACGACTAACGGCTGA