ViewGene
Locus Name:
GeneID:
Location:

GeneID:2702
TrivialName: PA14_19150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19150
PAO1 Ortholog Locus:PA3474
Sequence Length:861
Protein Length:286
Start: 1653556
Stop: 1654416
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06862.1|AE004768_7 (AE004768) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 286/286 (100%), Positives = 286/286 (100%)
Sequence:
ATGCGTTATCTACTGTTCGTCACCGTCCTCTGGGCGTTCTCCTTCAACCTGATCGGCGAGTACCTCGCCGGC
CAGGTCGACAGCTACTTCGCCGTGCTTACCCGGGTCCTTCTCGCTGGCCTGGTGTTTCTCCCGCTGACCCGC
TGGCGCGGCGTCGAACCGCGTTTCGTCGGCGGAGTGATGCTGGTCGGCGCGCTGCAGTTCGGCATCACCTAC
GTCTGCCTGTACCTGAGCTTCAACGTGCTGACGGTGCCCGAGGTTCTGCTGTTCACCGTGCTGACGCCGGTC
CACGTGGCCCTGTTCGACGACCTGCTCAACCGCCGCTTCAACTTCTGGGCCCTGGCCGCCGCGCTGGTGGCG
GTGCTGGGCGCGGCGATCATCCGCTACGACGGGATCACCGGCGAGTTCCTCCAGGGCTTCCTGCTGCTGCAA
CTGGCCAACGCCACCTTCGCCGCCGGCCAGGTGCTGTACAAGCGCCTGGTGCGCAAGTACCCGTCCGAGCTG
CCGCAGCGCCAGCGCTTCGGTTATTTCTTCGTTGGCGCGCTGCTGGTGGCGTTGCCTGCCTGGCTGCTGTTC
GGCGATCCGCAGCGCCTGCCGGCCGGCGAGCTGCAATGGGGCGTACTGGTATGGATGGGGCTGCTGGCCACC
GCCCTCGGCCAGTTCTGGTGGAACAAGGGCGCCACCGAGGTGGACGCCGGTACCCTGGCGGTGATGAACAAC
CTGCACGTGCCGGTCGGGTTGCTGCTCAACCTGCTGATCTGGAACCAGCACGCAGACCTGCCGCGCCTGGCC
CTGGGCGGCGCGGTGATCGTCGCTTCGCTGTGGGTCAACCGGCTCGGCCGGCGCGAGGTGCGTGCATGA
Translation:
MRYLLFVTVLWAFSFNLIGEYLAGQVDSYFAVLTRVLLAGLVFLPLTRWRGVEPRFVGGVMLVGALQFGITY
VCLYLSFNVLTVPEVLLFTVLTPVHVALFDDLLNRRFNFWALAAALVAVLGAAIIRYDGITGEFLQGFLLLQ
LANATFAAGQVLYKRLVRKYPSELPQRQRFGYFFVGALLVALPAWLLFGDPQRLPAGELQWGVLVWMGLLAT
ALGQFWWNKGATEVDAGTLAVMNNLHVPVGLLLNLLIWNQHADLPRLALGGAVIVASLWVNRLGRREVRA*
AnnotationID:2710GeneID:2702
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 10:10:56
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:yigM
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0697
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57540.1| (AE016870) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 292

 Score =  426 bits (1095), Expect = e-119
 Identities = 205/286 (71%), Positives = 244/286 (85%)

>gb|AAN70110.1|AE016650_9 (AE016791) carboxylate/amino acid/amine transporter, putative
           [Pseudomonas putida KT2440]
          Length = 291

 Score =  414 bits (1064), Expect = e-115
 Identities = 202/282 (71%), Positives = 239/282 (84%)

>gb|AAN83182.1|AE016769_297 (AE016769) Hypothetical membrane protein yigM [Escherichia coli
           CFT073]
          Length = 324

 Score =  298 bits (763), Expect = 2e-80
 Identities = 150/276 (54%), Positives = 197/276 (71%), Gaps = 3/276 (1%)








 
Structural Features:
COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily 
[Carbohydrate transport and metabolism / Amino acid transport and metabolism]
CD-Length = 292 residues,  96.6% aligned
Score = 48.3 bits (114), Expect = 1e-06
Identities = 71/288 (24%), Positives = 112/288 (38%), Gaps = 16/288 (5%)








   
Genomic Context:






   
Comment:


















    ReferenceID:5407




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22552




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32085




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2702_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2702
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4427
                           PA3474_tr
                           translation of PA3474
                           286
                           99.99
                           99.99
                           0
                           1475.0
     

     
     
128621
                           gb|AAG06862.1|AE004768_7
                           (AE004768) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           286
                           99.99
                           99.99
                           0
                           1475.0
     

     
     
128622
                           gb|AAC08597.1|
                           (AF054868) hypothetical 0299 protein [Pseudomonas aeruginosa]
                           286
                           97.55
                           97.55
                           0
                           1428.0
     

     
     
128623
                           gb|AAO57540.1|
                           (AE016870) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           292
                           70.20
                           83.56
                           6
                           1095.0
     

     
     
128624
                           gb|AAN70110.1|AE016650_9
                           (AE016791) carboxylate/amino acid/amine transporter, putative [Pseudomonas putida KT2440]
                           291
                           69.41
                           82.13
                           5
                           1059.0
     

     






      

          
GC ORFID: 45704How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3474Glimmer Score: 

          
Start: 3300377Stop: 3299517

          
Length: 861


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3474 translation of PA3474Homolog Bit Score 572.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7788 (ORF: BLASTX 424.0), t_PA3474 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTTATCTACTGTTCGTCACCGTCCTCTGGGCGTTCTCCTTCAACCTGATCGGCGAGTACCTCGCCGGC 
CAGGTCGACAGCTACTTCGCCGTGCTTACCCGGGTCCTTCTCGCTGGCCTGGTGTTTCTCCCGCTGACCCGC 
TGGCGCGGCGTCGAACCGCGTTTCGTCGGCGGAGTGATGCTGGTCGGCGCGCTGCAGTTCGGCATCACCTAC 
GTCTGCCTGTACCTGAGCTTCAACGTGCTGACGGTGCCCGAGGTTCTGCTGTTCACCGTGCTGACGCCGGTC 
CACGTGGCCCTGTTCGACGACCTGCTCAACCGCCGCTTCAACTTCTGGGCCCTGGCCGCCGCGCTGGTGGCG 
GTGCTGGGCGCGGCGATCATCCGCTACGACGGGATCACCGGCGAGTTCCTCCAGGGCTTCCTGCTGCTGCAA 
CTGGCCAACGCCACCTTCGCCGCCGGCCAGGTGCTGTACAAGCGCCTGGTGCGCAAGTACCCGTCCGAGCTG 
CCGCAGCGCCAGCGCTTCGGTTATTTCTTCGTTGGCGCGCTGCTGGTGGCGTTGCCTGCCTGGCTGCTGTTC 
GGCGATCCGCAGCGCCTGCCGGCCGGCGAGCTGCAATGGGGCGTACTGGTATGGATGGGGCTGCTGGCCACC 
GCCCTCGGCCAGTTCTGGTGGAACAAGGGCGCCACCGAGGTGGACGCCGGTACCCTGGCGGTGATGAACAAC 
CTGCACGTGCCGGTCGGGTTGCTGCTCAACCTGCTGATCTGGAACCAGCACGCAGACCTGCCGCGCCTGGCC 
CTGGGCGGCGCGGTGATCGTCGCTTCGCTGTGGGTCAACCGGCTCGGCCGGCGCGAGGTGCGTGCATGA