ViewGene
Locus Name:
GeneID:
Location:

GeneID:2701
TrivialName: PA14_20640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20640
PAO1 Ortholog Locus:PA3358
Sequence Length:879
Protein Length:292
Start: 1777648
Stop: 1776770
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06746.1|AE004758_3 (AE004758) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 291/292 (99%), Positives = 291/292 (99%)
Sequence:
ATGCGCACACCCGCCTGGCTCGGCAGCGGCATGCCGCTGCTCTTCGTGCTGCTCTGGAGCACTGGATTCCTC
GGCGCCAAGTTCGGCCTGCCGTACGCCGAGCCCTTCACCTTCCTGGCCATCCGCCTGCTCCTCGCGGCCGCC
CTGCTGGCCGCCTTCGCCCTGCTCAGCGGTGCGCCCTGGCCGGGCTCGGCACGGCTGGCCGGGCATGTCGCG
GTCGCCGGCCTGCTGGTCCATGGCCTGTACCTGGGCGGGGTGTTCCTCGCCATCGAGCACGGCATGTCGGCC
GGCCTGACCTCCCTGTTGGTCGGCCTGCAACCGCTGGCTACCGCGGCCCTGGCCGGCATCTGGCTCGGCGAG
CAGGTCAGCCGCCGGCAATGGCTGGGACTGGCGCTCGGCCTGGCTGGCGTAGCCCTGGTGGTACTCGGCCGC
ATCCACGGTGGCGCCGACGGCCTGGCCTGGGCCGCGGTGCTGGTGGCACTGGCGGCGATCACCTGCGGCACG
CTGTACCAGAAGCGCTTCTGCGGCGGCATGGACCTGCGCACCGGCGGCGTCGTCCAGTACCTGGCCAGCGGC
GCCCTGCTCGGCCTCGCCGCGCTGCTTTTCGAAAGCCGCGAGGTGCAGTGGAGCACGCCGTTCGTGCTGACC
CTCGGCTGGCTGGTGCTGGGACTCTCGTTCGGCGCCGTCGGCCTGCTCTACACGCTGATCCGGCATGGCGCC
GCGTCGAAGGTGGCGAGCCTGTTCTACCTGGTGCCGCCAGTGACCGCGCTGGCCTCCTGGCTGCTGTTCGAC
GAGCCCCTGGCGCCGGCGGCGATCGGCGGCATGCTGCTGGTGATGCTCGGCGTCGCGCTGGTCAACTGGCCG
GGCCGGCGCGCCTGA
Translation:
MRTPAWLGSGMPLLFVLLWSTGFLGAKFGLPYAEPFTFLAIRLLLAAALLAAFALLSGAPWPGSARLAGHVA
VAGLLVHGLYLGGVFLAIEHGMSAGLTSLLVGLQPLATAALAGIWLGEQVSRRQWLGLALGLAGVALVVLGR
IHGGADGLAWAAVLVALAAITCGTLYQKRFCGGMDLRTGGVVQYLASGALLGLAALLFESREVQWSTPFVLT
LGWLVLGLSFGAVGLLYTLIRHGAASKVASLFYLVPPVTALASWLLFDEPLAPAAIGGMLLVMLGVALVNWP
GRRA*
AnnotationID:2709GeneID:2701
AnnotatorUID: diggins
Modification Date/Time: 2005-04-17 17:05:22
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA3358
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO08283.1|AE016813_35 (AE016813) Permease of the drug/metabolite transporter (DMT)
           superfamily [Vibrio vulnificus CMCP6]
          Length = 301

 Score =  252 bits (643), Expect = 2e-66
 Identities = 140/278 (50%), Positives = 182/278 (65%), Gaps = 4/278 (1%)

>emb|CAD15309.1| (AL646065) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 307

 Score =  249 bits (636), Expect = 1e-65
 Identities = 140/287 (48%), Positives = 178/287 (62%), Gaps = 11/287 (3%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5405




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22550




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32196




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2701_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2701
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4426
                           PA3358_tr
                           translation of PA3358
                           292
                           99.65
                           99.65
                           0
                           1475.0
     

     
     
128606
                           gb|AAG06746.1|AE004758_3
                           (AE004758) hypothetical protein PA3358 [Pseudomonas aeruginosa PAO1]
                           292
                           99.65
                           99.65
                           0
                           1475.0
     

     
     
128607
                           emb|CAE28622.1|
                           (BX572603) Permeases of the drug/metabolite transporter (DMT) superfamily [Rhodopseudomonas palustris CGA009]
                           296
                           49.66
                           65.20
                           9
                           722.0
     

     
     
128608
                           dbj|BAC50578.1|
                           (AP005954) bll5313 [Bradyrhizobium japonicum USDA 110]
                           294
                           49.31
                           63.60
                           6
                           713.0
     

     
     
128611
                           emb|CAD15309.1|
                           (AL646065) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           314
                           47.77
                           59.87
                           29
                           641.0
     

     






      

          
GC ORFID: 45703How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3358Glimmer Score: 

          
Start: 3176284Stop: 3177162

          
Length: 879


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3358 translation of PA3358Homolog Bit Score 572.0

          
Other Homologs:  t_PA3358 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCACACCCGCCTGGCTCGGCAGCGGCATGCCGCTGCTCTTCGTGCTGCTCTGGAGCACTGGATTCCTC 
GGCGCCAAGTTCGGCCTGCCGTACGCCGAGCCCTTCACCTTCCTGGCCATCCGCCTGCTCCTCGCGGCCGCC 
CTGCTGGCCGCCTTCGCCCTGCTCAGCGGTGCGCCCTGGCCGGGCTCGGCACGGCTGGCCGGGCATGTCGCG 
GTCGCCGGCCTGCTGGTCCATGGCCTGTACCTGGGCGGGGTGTTCCTCGCCATCGAGCACGGCATGTCGGCC 
GGCCTGACCTCCCTGTTGGTCGGCCTGCAACCGCTGGCTACCGCGGCCCTGGCCGGCATCTGGCTCGGCGAG 
CAGGTCAGCCGCCGGCAATGGCTGGGACTGGCGCTCGGCCTGGCTGGCGTAGCCCTGGTGGTACTCGGCCGC 
ATCCACGGTGGCGCCGACGGCCTGGCCTGGGCCGCGGTGCTGGTGGCACTGGCGGCGATCACCTGCGGCACG 
CTGTACCAGAAGCGCTTCTGCGGCGGCATGGACCTGCGCACCGGCGGCGTCGTCCAGTACCTGGCCAGCGGC 
GCCCTGCTCGGCCTCGCCGCGCTGCTTTTCGAAAGCCGCGAGGTGCAGTGGAGCACGCCGTTCGTGCTGACC 
CTCGGCTGGCTGGTGCTGGGACTCTCGTTCGGCGCCGTCGGCCTGCTCTACACGCTGATCCGGCATGGCGCC 
GCGTCGAAGGTGGCGAGCCTGTTCTACCTGGTGCCGCCAGTGACCGCGCTGGCCTCCTGGCTGCTGTTCGAC 
GAGCCCCTGGCGCCGGCGGCGATCGGCGGCATGCTGCTGGTGATGCTCGGCGTCGCGCTGGTCAACTGGCCG 
GGCCGGCGCGCCTGA