ViewGene
Locus Name:
GeneID:
Location:

GeneID:2700
TrivialName: PA14_30790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30790
PAO1 Ortholog Locus:PA2576
Sequence Length:900
Protein Length:299
Start: 2669920
Stop: 2670819
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05964.1|AE004686_2 (AE004686) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 293/299 (97%), Positives = 294/299 (98%)
Sequence:
ATGAACGATCCGATCCGTCGCGGTACGCTGGAAATGACTTCGGCCATGCTGATCTGCGGCACCATTGGCTGG
CTGGTGCTGCTCTCCGGGCAGCCCGTGCTGGACGTGGTGTTCTGGCGCTGCGTATTCGGTTTCGCCGCCCTG
CTGGTCGCCTGTGCCGTGCTGGGCTTCCTGCGCCGCGGCAGCCTGGGGCGCGAGGCGTTCCTGCTGGCGCTC
CTCAGCGGGGTGTTCATCGTCGGCAACTGGGTGTTGCTGTTCGCATCCTACTCACGGGCTTCGATCGCCATC
GGTACCGCGGTCTACAACGTCCAGCCGTTCATGCTGGTGGGGCTAGGCGCGGCGTTTCTCGGCGAGAAGGTC
ACGGCGCGCAAGCTGGGCTGGCTGGGGCTTTCGTTCGCCGGCATGCTGGCGATCGTCAGCGCCCACGGCGAC
AGCGACGCCCCGCGCGGGGACTACCTGTTCGGTATCCTCCTGGCGCTCGCTGCCGCGCTGCTGTATGCCTTT
GCCGCGCTGATCGTGAAGCGCCTGCAAGGCACGCCGCCGCATCTTATCGCCTTGATCCAGGTGGGCACCGGC
GTGCTGATGCTCGCACCGCTGGCGAACCTTGCCGAACTGCCCCGGGGCGTTGCTCCCTGGGCCAGCCTGGCG
ACCCTGGGAATCGTCCATACCGGGCTGATGTACGTGCTGCTCTACGGCGCCATTCAGAAATTGCCGACGGCG
CTGACCGGTGCGTTGTCCTTTATCTATCCGGTCGCGGCGATCCTGGTGGACTGGCTGGTCTTCGAACATCGC
CTGAGCCTGGCGCAGTGGCTTGGCGTGGCCGCCATCCTGCTTGCCGCGGCGGGCATGCAGCAGGGTTGGAGC
GTGCGCCTGCCGGGGCCGGCAGTGCGGCGCGGCTGA
Translation:
MNDPIRRGTLEMTSAMLICGTIGWLVLLSGQPVLDVVFWRCVFGFAALLVACAVLGFLRRGSLGREAFLLAL
LSGVFIVGNWVLLFASYSRASIAIGTAVYNVQPFMLVGLGAAFLGEKVTARKLGWLGLSFAGMLAIVSAHGD
SDAPRGDYLFGILLALAAALLYAFAALIVKRLQGTPPHLIALIQVGTGVLMLAPLANLAELPRGVAPWASLA
TLGIVHTGLMYVLLYGAIQKLPTALTGALSFIYPVAAILVDWLVFEHRLSLAQWLGVAAILLAAAGMQQGWS
VRLPGPAVRRG*
AnnotationID:2708GeneID:2700
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 07:07:30
Gene Name:
Confidence Code:3
GeneProduct:putative permease
Cell Localization:()
Synonyms:PA2576
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69887.1|AE016627_9 (AE016790) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 307

 Score =  410 bits (1054), Expect = e-114
 Identities = 211/290 (72%), Positives = 232/290 (80%)

>emb|CAC41780.1| (AL591783) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Sinorhizobium
           meliloti]
          Length = 304

 Score =  352 bits (903), Expect = 2e-96
 Identities = 183/298 (61%), Positives = 216/298 (72%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5403




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22548




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33143




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2700_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2700
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4425
                           PA2576_tr
                           translation of PA2576
                           299
                           97.99
                           98.32
                           0
                           1475.0
     

     
     
128602
                           gb|AAG05964.1|AE004686_2
                           (AE004686) hypothetical protein PA2576 [Pseudomonas aeruginosa PAO1]
                           299
                           97.99
                           98.32
                           0
                           1475.0
     

     
     
128603
                           gb|AAN69887.1|AE016627_9
                           (AE016790) membrane protein, putative [Pseudomonas putida KT2440]
                           307
                           69.38
                           76.22
                           8
                           1053.0
     

     
     
128604
                           emb|CAC41780.1|
                           (AL591783) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Sinorhizobium meliloti]
                           304
                           60.19
                           71.05
                           5
                           901.0
     

     
     
128605
                           dbj|BAB50702.1|
                           (AP003003) hypothetical protein [Mesorhizobium loti]
                           303
                           59.40
                           71.61
                           6
                           887.0
     

     






      

          
GC ORFID: 45702How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2576Glimmer Score: 

          
Start: 2284006Stop: 2283107

          
Length: 900


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2576 translation of PA2576Homolog Bit Score 572.0

          
Other Homologs:  t_PA2576 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGATCCGATCCGTCGCGGTACGCTGGAAATGACTTCGGCCATGCTGATCTGCGGCACCATTGGCTGG 
CTGGTGCTGCTCTCCGGGCAGCCCGTGCTGGACGTGGTGTTCTGGCGCTGCGTATTCGGTTTCGCCGCCCTG 
CTGGTCGCCTGTGCCGTGCTGGGCTTCCTGCGCCGCGGCAGCCTGGGGCGCGAGGCGTTCCTGCTGGCGCTC 
CTCAGCGGGGTGTTCATCGTCGGCAACTGGGTGTTGCTGTTCGCATCCTACTCACGGGCTTCGATCGCCATC 
GGTACCGCGGTCTACAACGTCCAGCCGTTCATGCTGGTGGGGCTAGGCGCGGCGTTTCTCGGCGAGAAGGTC 
ACGGCGCGCAAGCTGGGCTGGCTGGGGCTTTCGTTCGCCGGCATGCTGGCGATCGTCAGCGCCCACGGCGAC 
AGCGACGCCCCGCGCGGGGACTACCTGTTCGGTATCCTCCTGGCGCTCGCTGCCGCGCTGCTGTATGCCTTT 
GCCGCGCTGATCGTGAAGCGCCTGCAAGGCACGCCGCCGCATCTTATCGCCTTGATCCAGGTGGGCACCGGC 
GTGCTGATGCTCGCACCGCTGGCGAACCTTGCCGAACTGCCCCGGGGCGTTGCTCCCTGGGCCAGCCTGGCG 
ACCCTGGGAATCGTCCATACCGGGCTGATGTACGTGCTGCTCTACGGCGCCATTCAGAAATTGCCGACGGCG 
CTGACCGGTGCGTTGTCCTTTATCTATCCGGTCGCGGCGATCCTGGTGGACTGGCTGGTCTTCGAACATCGC 
CTGAGCCTGGCGCAGTGGCTTGGCGTGGCCGCCATCCTGCTTGCCGCGGCGGGCATGCAGCAGGGTTGGAGC 
GTGCGCCTGCCGGGGCCGGCAGTGCGGCGCGGCTGA