ViewGene

Locus Name:
GeneID:
Location:

GeneID:270
TrivialName: PA14_39520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39520
PAO1 Ortholog Locus:PA1933
Sequence Length:2205
Protein Length:734
Start: 3519209
Stop: 3517005
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05321.1|AE004619_8 (AE004619) probable hydroxylase large subunit [Pseudomonas aeruginosa PAO1]
Identities = 727/734 (99%), Positives = 729/734 (99%)
Sequence:
ATGAGCAGCCTGCCACACAGCACCGGGCAAGCCCTGGATCGCGTCGACGGGCCAGCCAAGGTCACCGGCCAG
GCTCGTTACGCCGCCGAATATCCTGCCGCCGACCTGCTCCACGGCAGCGTGGTCAGCAGCGACGTCGCCCGC
GGCCGGGTGCGCGGCATCGACTGTGCGGCGGCCCTGGCGGTACCCGGGGTGGTCGCGGTACTGCATCACCTG
AACCGGCCGCCGATGGCGGGCGACGACGAGCCCTACAAGGACGCCGATGCCGCCGAAGGCGAACCCTTCCGC
CCGCTGTTCGACGACCGCGTCCTGTACAGCGGCCAGCCCCTTGCCCTGGTCCTGGCACGGAGCCTGGAACTG
GCCCGCTACGCGGGCTCGCTGCTGCGCATCGATATCGAGCCCGAGCCGCACCAGACCGACCTGCTGGCCGCC
CTCGAACAGGCCCATGAGGCTCCCGCCGAACTGCCCGCCGAGCGCGGCGATTTCTACACCGCCTACCGCGCC
GCGCCGATTCGGGTCGAGGCCAGCTACAGCACGCCGATCGAGCACCACAATCCCATGGAACCGCACGCGTCC
ACGGTCATCGTCCAGCCCGACGGCAGCCTGCTGGTGCACGACAAGACCCAGGGGACGCAGAACAGCCAGGCC
TACCTGCAAAAGGTCTTCGGCCTGCCCGCCGACAAGGTAAGGGTCTGTGCCGCCTACGTCGGCGGCGCCTTC
GGCTCCGGCCTGCGTCCGCAATACCAGTTGACCCTGGCGGTGATGGCGGCGCTGCAACTGCGGCGGTCGGTG
CGCGTAGTGCTGACCCGCCAGCAGATGTTCACCTTCGGCTACCGGCCGCGCACCCTGCAGCGCCTGCAACTG
GGCGCCGATGCCGAGGGGCGCCTGCTTGCGCTGGGCCACCAGGCGACAGCGCAGACCTCGCGCTTCGAAGAC
TTCACCGAGCACGTGGTGGAGTGGAGCGGCATGCTCTATCGCTGCGAGAACCTTTCCCTGGCCTACCGTCTG
GTGCCGCTGGACGTCTATACCCCGCTGGACATGCGCGCCCCCGGCGCGGCGCTGGGATTGATCGGGCTGGAA
TGCGCGATGGACGAACTGGCGGTGCGGCTCGGCATGGACCCCATCGCGCTGCGCCGGTTCAACTTCGCCGAG
CGCAACGGCAACGAGGACAAGCCGTACTCCAGCAAGGCGCTGCTGGCCTGCTACGAGGAGGGCGCCCGGCGC
TTCGGTTGGCAGGCCCGCGACCCACGGCCACGGAGCATGAGCGAAGGGCGCCAGTTGCTCGGCTGGGGCATG
GCCGGCGGCGTCTGGGAGGCCATGCAGAGCAAGGCCAGCGCGAGGGCGCGGCTGGAGGCGGACGGCCTGCTG
CGGGTGGCCAGCGCGACCACGGATATCGGCACCGGCACCTACACGGTGATGACCCAGATCGCCGCCGACGCC
GCTGGCATGGCGCCGGAAGAGGTGCGCTTCCAGCTTGGCGACAGTGCGTTGCCCAAGGCTCCATTGCAGGGC
GGCTCGTTCACCGTCTCGTCGGTCGGTTCCGCCGTCCGCCTGGCCTGCCTGCGCCTGCGCCAGGCCCTGGTC
GCCCATGCCAGGGCCCGCCATCCGGAGCTGGCCGGCGCCGCCGAAGAGCGCTTCCGCATATGCCGTGGCCAT
CTGGAAGCGGGCGATACGCGATACGCCCTGGCCGACCTGCTGCAAGGGCTGCCGGAAGACGCGTTGCAGGTG
GAGGTGGAAGCTGAACCCTCGGCGCGGCGCAAAGGCTACGCCACCGCGACCCATTCGGCGGTATTCGTCGAG
GTGCGGATCGATGAAGCCCTCGGTACCCTGCGTGTGAGCCGGGTGGTCAGCGCGGTCGCGGCGGGGTGGGTG
ATCAACCCGAAGACCGCTCGCAGCCAGATACTCGGCGGGGTGGTCTGGGGCCTGGGCATGGCCTTGCAGGAG
GAAACCCAGGTCGACCATGCGCTGGGCCGCTGCATGAACCACAACCTCGCCGAGTACCACATCCCGGTTAAC
GCCGATATTGGCGATATCGAGGTGATCTTCGTCGACGAACCCGACGATATCGTTAACGAACTGGGCTCCAAG
GGCGTCGGCGAAATAGGCATCGTCGGCGTCGCCGCCGCAGTGGCGAATGCCGTGTACCACGCCACCGGCCGC
CGCCTGCGCGACTTCCCGCTGACCGTCGACAAGTTGCTCGGCTGA
Translation:
MSSLPHSTGQALDRVDGPAKVTGQARYAAEYPAADLLHGSVVSSDVARGRVRGIDCAAALAVPGVVAVLHHL
NRPPMAGDDEPYKDADAAEGEPFRPLFDDRVLYSGQPLALVLARSLELARYAGSLLRIDIEPEPHQTDLLAA
LEQAHEAPAELPAERGDFYTAYRAAPIRVEASYSTPIEHHNPMEPHASTVIVQPDGSLLVHDKTQGTQNSQA
YLQKVFGLPADKVRVCAAYVGGAFGSGLRPQYQLTLAVMAALQLRRSVRVVLTRQQMFTFGYRPRTLQRLQL
GADAEGRLLALGHQATAQTSRFEDFTEHVVEWSGMLYRCENLSLAYRLVPLDVYTPLDMRAPGAALGLIGLE
CAMDELAVRLGMDPIALRRFNFAERNGNEDKPYSSKALLACYEEGARRFGWQARDPRPRSMSEGRQLLGWGM
AGGVWEAMQSKASARARLEADGLLRVASATTDIGTGTYTVMTQIAADAAGMAPEEVRFQLGDSALPKAPLQG
GSFTVSSVGSAVRLACLRLRQALVAHARARHPELAGAAEERFRICRGHLEAGDTRYALADLLQGLPEDALQV
EVEAEPSARRKGYATATHSAVFVEVRIDEALGTLRVSRVVSAVAAGWVINPKTARSQILGGVVWGLGMALQE
ETQVDHALGRCMNHNLAEYHIPVNADIGDIEVIFVDEPDDIVNELGSKGVGEIGIVGVAAAVANAVYHATGR
RLRDFPLTVDKLLG*
AnnotationID:280GeneID:270
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 12:12:30
Gene Name:
Confidence Code:3
GeneProduct:putative hydroxylase large subunit
Cell Localization:()
Synonyms:PA1933
Cell Localization Confidence Code:5
MolecularFunction:putative aldehyde oxidase and xanthine dehydrogenase family protein
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1529,pfam02738
Secondary Functional Category(ies):carbon compound catabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68917.1|AE016523_6 (AE016786) oxidoreductase, large subunit, putative [Pseudomonas
           putida KT2440]
          Length = 738

 Score = 1017 bits (2629), Expect = 0.0
 Identities = 512/725 (70%), Positives = 591/725 (81%), Gaps = 1/725 (0%)

>gb|AAM40390.1| (AE012207) hydroxylase large subunit [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 760

 Score =  779 bits (2012), Expect = 0.0
 Identities = 411/739 (55%), Positives = 526/739 (71%), Gaps = 15/739 (2%)

Structural Features:
COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs 
[Energy production and conversion]
CD-Length = 731 residues,  99.0% aligned
Score =  516 bits (1331), Expect = 3e-147
Identities = 252/739 (34%), Positives = 354/739 (47%), Gaps = 25/739 (3%)

pfam02738, Ald_Xan_dh_C2, Aldehyde oxidase and xanthine dehydrogenase, 
molybdopterin binding domain.
CD-Length = 549 residues,  99.8% aligned
Score =  282 bits (724), Expect = 7e-77
Identities = 160/560 (28%), Positives = 245/560 (43%), Gaps = 35/560 (6%)
Genomic Context:
Comment:
ReferenceID:543
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17685
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32779
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:270_cdd.html
URL:
Homologs By Global Alignment
Gene ID:270

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
449 PA1933_tr translation of PA1933 734 99.04 99.31 0 3712.0
23873 gb|AAG05321.1|AE004619_8 (AE004619) probable hydroxylase large subunit [Pseudomonas aeruginosa PAO1] 734 99.04 99.31 0 3712.0
23874 gb|AAN68917.1|AE016523_6 (AE016786) oxidoreductase, large subunit, putative [Pseudomonas putida KT2440] 739 69.41 80.10 6 2624.0
23875 gb|AAO58096.1| (AE016872) aldehyde oxidase and xanthine dehydrogenase family protein [Pseudomonas syringae pv. tomato str. DC3000] 735 68.57 81.22 3 2609.0
23876 gb|AAM40390.1| (AE012207) hydroxylase large subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] 762 54.19 69.55 30 2023.0
GC ORFID: 43272How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1933Glimmer Score:
Start: 1434702Stop: 1436906
Length: 2205
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1933 translation of PA1933Homolog Bit Score 1434.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5394 (ORF: BLASTX 1006.0), psyr_15may02_Scaffold7_revised_gene7486 (ORF: BLASTX 510.0), t_PA1933 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCAGCCTGCCACACAGCACCGGGCAAGCCCTGGATCGCGTCGACGGGCCAGCCAAGGTCACCGGCCAG
GCTCGTTACGCCGCCGAATATCCTGCCGCCGACCTGCTCCACGGCAGCGTGGTCAGCAGCGACGTCGCCCGC
GGCCGGGTGCGCGGCATCGACTGTGCGGCGGCCCTGGCGGTACCCGGGGTGGTCGCGGTACTGCATCACCTG
AACCGGCCGCCGATGGCGGGCGACGACGAGCCCTACAAGGACGCCGATGCCGCCGAAGGCGAACCCTTCCGC
CCGCTGTTCGACGACCGCGTCCTGTACAGCGGCCAGCCCCTTGCCCTGGTCCTGGCACGGAGCCTGGAACTG
GCCCGCTACGCGGGCTCGCTGCTGCGCATCGATATCGAGCCCGAGCCGCACCAGACCGACCTGCTGGCCGCC
CTCGAACAGGCCCATGAGGCTCCCGCCGAACTGCCCGCCGAGCGCGGCGATTTCTACACCGCCTACCGCGCC
GCGCCGATTCGGGTCGAGGCCAGCTACAGCACGCCGATCGAGCACCACAATCCCATGGAACCGCACGCGTCC
ACGGTCATCGTCCAGCCCGACGGCAGCCTGCTGGTGCACGACAAGACCCAGGGGACGCAGAACAGCCAGGCC
TACCTGCAAAAGGTCTTCGGCCTGCCCGCCGACAAGGTAAGGGTCTGTGCCGCCTACGTCGGCGGCGCCTTC
GGCTCCGGCCTGCGTCCGCAATACCAGTTGACCCTGGCGGTGATGGCGGCGCTGCAACTGCGGCGGTCGGTG
CGCGTAGTGCTGACCCGCCAGCAGATGTTCACCTTCGGCTACCGGCCGCGCACCCTGCAGCGCCTGCAACTG
GGCGCCGATGCCGAGGGGCGCCTGCTTGCGCTGGGCCACCAGGCGACAGCGCAGACCTCGCGCTTCGAAGAC
TTCACCGAGCACGTGGTGGAGTGGAGCGGCATGCTCTATCGCTGCGAGAACCTTTCCCTGGCCTACCGTCTG
GTGCCGCTGGACGTCTATACCCCGCTGGACATGCGCGCCCCCGGCGCGGCGCTGGGATTGATCGGGCTGGAA
TGCGCGATGGACGAACTGGCGGTGCGGCTCGGCATGGACCCCATCGCGCTGCGCCGGTTCAACTTCGCCGAG
CGCAACGGCAACGAGGACAAGCCGTACTCCAGCAAGGCGCTGCTGGCCTGCTACGAGGAGGGCGCCCGGCGC
TTCGGTTGGCAGGCCCGCGACCCACGGCCACGGAGCATGAGCGAAGGGCGCCAGTTGCTCGGCTGGGGCATG
GCCGGCGGCGTCTGGGAGGCCATGCAGAGCAAGGCCAGCGCGAGGGCGCGGCTGGAGGCGGACGGCCTGCTG
CGGGTGGCCAGCGCGACCACGGATATCGGCACCGGCACCTACACGGTGATGACCCAGATCGCCGCCGACGCC
GCTGGCATGGCGCCGGAAGAGGTGCGCTTCCAGCTTGGCGACAGTGCGTTGCCCAAGGCTCCATTGCAGGGC
GGCTCGTTCACCGTCTCGTCGGTCGGTTCCGCCGTCCGCCTGGCCTGCCTGCGCCTGCGCCAGGCCCTGGTC
GCCCATGCCAGGGCCCGCCATCCGGAGCTGGCCGGCGCCGCCGAAGAGCGCTTCCGCATATGCCGTGGCCAT
CTGGAAGCGGGCGATACGCGATACGCCCTGGCCGACCTGCTGCAAGGGCTGCCGGAAGACGCGTTGCAGGTG
GAGGTGGAAGCTGAACCCTCGGCGCGGCGCAAAGGCTACGCCACCGCGACCCATTCGGCGGTATTCGTCGAG
GTGCGGATCGATGAAGCCCTCGGTACCCTGCGTGTGAGCCGGGTGGTCAGCGCGGTCGCGGCGGGGTGGGTG
ATCAACCCGAAGACCGCTCGCAGCCAGATACTCGGCGGGGTGGTCTGGGGCCTGGGCATGGCCTTGCAGGAG
GAAACCCAGGTCGACCATGCGCTGGGCCGCTGCATGAACCACAACCTCGCCGAGTACCACATCCCGGTTAAC
GCCGATATTGGCGATATCGAGGTGATCTTCGTCGACGAACCCGACGATATCGTTAACGAACTGGGCTCCAAG
GGCGTCGGCGAAATAGGCATCGTCGGCGTCGCCGCCGCAGTGGCGAATGCCGTGTACCACGCCACCGGCCGC
CGCCTGCGCGACTTCCCGCTGACCGTCGACAAGTTGCTCGGCTGA