Modification Date/Time: 2006-04-06 13:01:23
Missense Discrepancy: FALSE
Comments:Homology: gb|AAG06332.1| AE004720_8 (AE004720) cobalamin biosynthetic protein CobN [Pseudomonas aeruginosa PAO1]
Identities = 1242/1248 (99%), Positives = 1244/1248 (99%)
Sequence:
ATGCACCTGTTGCGCACCCAACCTGGCGGCTTCGTTCCCGACGACGGCATCGCCCACCTGGCCCAGACTCCC
GCCGAGCTGGTGATCCTCTGCAGCGGCGATTCGCACCTGGCATTGCTGGCCGAGGCCGCCCGTGCGCTGCCG
GACGACTACCCGAGCCTGCGCCTGGCCAACCCCATGCAGTTGCAGAACCACGCCTCGGTGGACCTCTACGTC
GACGAAGTGCTGCGGCACGCGCGGGTGATCCTGCTTTCGCTGCACGGCGGCATCGGCTACTGGCGCTACGGC
GTGGAGCAACTGGTGGCGCTGGCCGAGCGCGGCGCGCTGCTGATCCCGGTGCCCGGCGACGACCGCCCCGAC
CCGGAGCTGAGCGCCCTCGGCAACCTGCCGGCGGAGCAGGCCGAGCGCTTCTGGCAATACTTGCGCCAGGGC
GGCCTTGAGAACGCCGGGCAGTTCTACCGCTGCCTGGCCAGCCAGTGCCTCGGCCGCGACTACGCCTGGCGC
GAACCGCAGGCGCTGCCGCGGGTGGCGCTGTTCCATCCACGGCATGCCGAGGCGACCCTGGAACACTGGCGT
GCCGACTGGCAGGCCGGGCGTCCGGTGGTCGGGTTGCTGTTCTATCGCACCCACCTGCAGGCAGCCAACACC
GCCTTCATCGCACGCTTCTGCGAGCGCCTCGCGGCGCAGGGGCTCAACCCGTTGCCGATCGCGCTGGCCAGC
CTCAAGGAAAGCGCCTGCCTGGCGCAGGTGGAAGACTGGCTGGAGCGCAGCGACGCCGCGCTGATCGTCAAT
ACCACCGGTTTCGCCCAGTCCAATCCGGAGGCGCCCGAGTTGCGTCCGTTCCGTCGCGACGTGCCGGTGTTG
CAGGCGATCTGCTCGCTGGACAACCGCCCGCTCTGGCTGGACAACCCGCAAGGCCTGGGGCCTCGCGACCTG
GCCATGCACGTGGCGCTGCCGGAGCTGGACGGACGCATCGTCACCCGGCCGATCAGTTTCAAGGGCCTGGCC
TGGCGCAGCGAACGCAGCGAGAGCGACGTGGTCTGCTATCTCGCCGACGACGAGCGCATGGATTTCGTCGCC
GAACTGGCGCGGCGCTGGGCCGAGCTGGCGCGCAAGCCAAACGCGGAAAAACGGGTGGCGCTGGTGCTGGCC
AACTACCCGACCCGCGATGGCCGGATCGGCAACGGCGTCGGCCTGGACACCCCGGCGGCGGCGCTGAACATC
CTTCGTGCCCTGCGCCAGCAGGGCTACCCGGTCGACGGACTGCCCGCCAGCGGAACCGAGCTGATCCGCCAG
TTGCTCGGCGGCGTCAGCAACGACCTGGAGCATCTCGACCTACGGCCCTGCGCCCAGAGCCTGGCGCTGGAC
GACTACCTGGCCTGCTTCGCACGCCTGCCGGAGCGCAATCGCCAGGCGGTGCTGGCGCGCTGGGGCGAACCG
CAACAGGACCCGATGTTCCGCGACGGGCGGATGATGGTCGCCGGCCTGCGCTATGGCCTGACCTTCGTCGGC
ATCCAGCCGGCGCGCGGCTATCAGCTCGATCCGGCAGCGATCTACCACGATCCCGACCTGGTGCCGCCGCAC
GGCTACCTGGCGTTCTACTTCTGGCTGCGCCACGCCTACCGCGCCGATGCCCTGCTGCACGTCGGCAAGCAC
GGCAACCTGGAATGGCTGCCGGGCAAGGGAGTCGGCCTGTCCGCCGAATGCTGGCCGGACGCGTTGCTCGGT
CCGCTGCCGAACATCTATCCGTTCATCGTCAACGACCCGGGGGAGGGCGCCCAGGCCAAGCGCCGCACCCAG
GCGGTGATCATCGACCACCTGATGCCGCCGCTGACCCGCGCCGAGAGCTACGGCCCGTTGCGCGACCTGGAG
CGCCTGGCCGACGAGTTCTACGATGCCTCGCTGCTCGACCCGCGCCGCGCCGAACAGTTGCGCGGCGAGATT
CTCGTCCTCCTGCGCGACAACCGTCTCGACCGCGAGATCGGCTTGCAGCTCAGCGACGATCCGGACAGTTGG
CTGCCGCAGCTGGACGCCTATCTCTGCGACCTGAAGGAGTCGCAGATCCGCGACGGCCTGCATGTGTTCGGC
GAATCGCCGAGCGGGCGATTGCGCCTGGATACCCTGCTGGCGCTGCTGCGGGTTCCGCGCGGCGATGGCAAG
GGCGCCAACGCCGGGTTGCTGAAGAGCCTGGCGGACGACCTTGGCCTGGGCTTCGATCCGCTGGCCTGCGAC
ATGGGCGAGGCCTGGCAGGGCGCGCGGCCGGGCTGCCTGGAAGAGCGGGGCGGGGAGCCCTGGCGTACCCTC
GGGGATACCCGCGAACGCCTGGAATTGCTGGCGTTGCACTGGATAGAACGCTGCCTGGGCGGCGAATCGCCG
CCTGCCGCCTGGCGTGCCAGCGGCGAGGTGTTGCGCGGCTTGTGCGAACAGGTGGCACCGACCCTGGACGCC
TGTGGCGCGGCCGAGATCGACGGACTGCTGGCAGCCCTCGAAGGGCGCTTCGTACCGGCCGGTCCGAGCGGC
GCGCCGAGTCGCGGGCGACTCGATGTGCTGCCCACCGGACGCAACTTCTTCTCGGTGGACGTGCGCAACCTG
CCGACCCCGACCGCCTGGCGCATCGGCTTCCAGTCGGCCAATCTGCTGCTCGAGCGTCACCTGCAGGAACAT
GGCGATCACCTGCGCCAGCTCGGCCTCTCGGTGTGGGGCACGGCGACCATGCGCACCGGCGGCGACGACATC
GCCCAGGCCCTGGCCCTGCTCGGCGTGCGACCGGTCTGGCAGGCCGGCAGCCAGCGCGTCGCCGATTTCGAG
ATCCTCCCGGTCTCCCTGCTGGACCGCCCGCGGGTCGACGTGACGCTGCGGGTCTCCGGGTTCTTCCGCGAC
GCCTTCGCCAACCTGATCCGCCTGTTCGATGCGGCGGTGCAGGCGGTCGCCGAGCTGGACGAGGCGGAGGAG
TTGAACCCGCTGGCCGCTCGCGTACGCCTGGAACGCCAGCGCCTCGAGGCGCAGGGTACGGCGCCGGCGGAG
GCGCGCCGGCAGGCCGGCTGGCGGATCTTCGGCGCCAAGCCGGGTGCCTACGGCGCCGGCGTGCAGGGCGCA
ATCGAAGAGCGGCTGTGGGAGACCCGCGCCGACCTTGCCGAGGTCTACCTGAACTGGGGCGGCTACGCCTAC
GGTGCCGCCGACGACGGCACGCCGGCGCGGGAACGCTtcgcCcagcgcCTGGAACGCCTGCAGGCGGTGCTG
CACAACCAGGACAACCGCGAGCACGaCCTGCTCGATTCCAACGACTACTACCAGTTCCAGGGCGGCATGCTG
GCGGCGGTGGAAACCCTGCGCGGCGCGCCGGTGGCCAGTTACCACGGCGACCACAGCCAGCCGGACAACCCG
CGCATCCGCACGCTCAAGGAAGAACTCAACCGGGTGGTGCGGGCGCGGGCGGTGAATCCGAAGTGGATCGCC
GGGATGAAGCGCCACGGCTACAAGGGTGCCTTCGAACTGGCGGCGACGGTGGACTACCTGTGCGCCTTCGAT
GCCACCAGCGAGCTGATCGACGACCACCAGTACGCGCTGCTGGCCGACGCCTACCTGCTCGACGCGGAGACC
CGCGAGTTCGTCCGCCAGCACAATCCGCAAGCCTTGCGCGACATGGCCGAGCGCCTGGTGGAGGCGCAGCGG
CGCGGGCTCTGGCAGGAGCCGGGGGCCTATCGCGAGGCCCTGGAGAACCTGCTGCTGGACGTCGAAGAGGAA
TAG
Translation:
MHLLRTQPGGFVPDDGIAHLAQTPAELVILCSGDSHLALLAEAARALPDDYPSLRLANPMQLQNHASVDLYV
DEVLRHARVILLSLHGGIGYWRYGVEQLVALAERGALLIPVPGDDRPDPELSALGNLPAEQAERFWQYLRQG
GLENAGQFYRCLASQCLGRDYAWREPQALPRVALFHPRHAEATLEHWRADWQAGRPVVGLLFYRTHLQAANT
AFIARFCERLAAQGLNPLPIALASLKESACLAQVEDWLERSDAALIVNTTGFAQSNPEAPELRPFRRDVPVL
QAICSLDNRPLWLDNPQGLGPRDLAMHVALPELDGRIVTRPISFKGLAWRSERSESDVVCYLADDERMDFVA
ELARRWAELARKPNAEKRVALVLANYPTRDGRIGNGVGLDTPAAALNILRALRQQGYPVDGLPASGTELIRQ
LLGGVSNDLEHLDLRPCAQSLALDDYLACFARLPERNRQAVLARWGEPQQDPMFRDGRMMVAGLRYGLTFVG
IQPARGYQLDPAAIYHDPDLVPPHGYLAFYFWLRHAYRADALLHVGKHGNLEWLPGKGVGLSAECWPDALLG
PLPNIYPFIVNDPGEGAQAKRRTQAVIIDHLMPPLTRAESYGPLRDLERLADEFYDASLLDPRRAEQLRGEI
LVLLRDNRLDREIGLQLSDDPDSWLPQLDAYLCDLKESQIRDGLHVFGESPSGRLRLDTLLALLRVPRGDGK
GANAGLLKSLADDLGLGFDPLACDMGEAWQGARPGCLEERGGEPWRTLGDTRERLELLALHWIERCLGGESP
PAAWRASGEVLRGLCEQVAPTLDACGAAEIDGLLAALEGRFVPAGPSGAPSRGRLDVLPTGRNFFSVDVRNL
PTPTAWRIGFQSANLLLERHLQEHGDHLRQLGLSVWGTATMRTGGDDIAQALALLGVRPVWQAGSQRVADFE
ILPVSLLDRPRVDVTLRVSGFFRDAFANLIRLFDAAVQAVAELDEAEELNPLAARVRLERQRLEAQGTAPAE
ARRQAGWRIFGAKPGAYGAGVQGAIEERLWETRADLAEVYLNWGGYAYGAADDGTPARERFAQRLERLQAVL
HNQDNREHDLLDSNDYYQFQGGMLAAVETLRGAPVASYHGDHSQPDNPRIRTLKEELNRVVRARAVNPKWIA
GMKRHGYKGAFELAATVDYLCAFDATSELIDDHQYALLADAYLLDAETREFVRQHNPQALRDMAERLVEAQR
RGLWQEPGAYREALENLLLDVEEE*
AnnotationID:37 GeneID:27
Modification Date/Time:
2005-04-08 14:02:01
GeneProduct: cobalamin biosynthetic protein CobN
Cell Localization Confidence Code: 5
Functional Category: (4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name: cobN/magnesium chelatase family protein
Functional Category Confidence Code: 5
Secondary Functional Category(ies):
Homology: >gb|AAN69108.1| AE016544_6 (AE016787) cobN protein, putative [Pseudomonas putida KT2440]
Length = 1253
Score = 1956 bits (5067), Expect = 0.0
Identities = 959/1252 (76%), Positives = 1073/1252 (85%), Gaps = 4/1252 (0%)
>gb|AAO56636.1| (AE016867) cobN/magnesium chelatase family protein [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 1254
Score = 1949 bits (5049), Expect = 0.0
Identities = 946/1253 (75%), Positives = 1070/1253 (85%), Gaps = 6/1253 (0%)
>emb|CAC46536.1| (AL591789) PROBABLE COBALAMIN BIOSYNTHESIS PROTEIN [Sinorhizobium
meliloti]
Length = 1275
Score = 1154 bits (2985), Expect = 0.0
Identities = 610/1254 (48%), Positives = 802/1254 (63%), Gaps = 33/1254 (2%)
Structural Features: pfam02514 , CobN-Mg_chel, CobN/Magnesium Chelatase.
CD-Length = 946 residues, 100.0% aligned
Score = 918 bits (2373), Expect = 0.0
Identities = 419/986 (42%), Positives = 562/986 (56%), Gaps = 51/986 (5%)
ReferenceID:36425
Author/Investigator(s):
Crouzet J, Levy-Schil S, Cameron B, Cauchois L, Rigault S, Rouyez MC, Blanche F, Debussche L, Thibaut D.
Title:
Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob
Source: J Bacteriol. 1991 Oct;173(19):6074-87.