ViewGene
Locus Name:
GeneID:
Location:

GeneID:2699
TrivialName: PA14_54670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54670
PAO1 Ortholog Locus:PA0743
Sequence Length:897
Protein Length:298
Start: 4846783
Stop: 4847679
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04132.1|AE004509_7 (AE004509) probable 3-hydroxyisobutyrate dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 294/298 (98%), Positives = 296/298 (99%)
Sequence:
ATGAAACAGATCGCCTTCATCGGCCTCGGCCACATGGGCGCGCCGATGGCCACCAACCTGCTCAAGGCCGGC
TACCTGCTGAACGTCTTCGACCTGGTGCAGAGCGCCGTCGACGGCCTGGTCGCCGCCGGCGCCGGCGCCGCC
CGCAGCGCCCGCGACGCGGTGCAGGGCGCCGACGTGGTCATCAGCATGCTGCCGGCCAGCCAGCACGTCGAA
GGCCTGTACCTCGACGACGATGGCCTGCTCGCGCACATCGCCCCCGGCACCCTGGTGCTGGAATGCTCGACC
ATCGCCCCGACCTCGGCGCGCAAGGTCCACGCCGCCGCCCGCGAGCGCGGCCTGGCGATGCTCGACGCGCCG
GTGTCCGGCGGCACTGCCGGCGCGGCAGCCGGCACCCTGACCTTCATGGTCGGCGGCGACGACGAAGCCCTG
GAGAAGGCCCGGCCGCTGTTCGAGGCCATGGGTCGCAACATCTTCCATGCCGGCCCCGACGGCGCCGGCCAG
GTGGCCAAGGTGTGCAACAACCAGCTCCTCGCGGTGCTGATGATCGGTACCGCAGAAGCCATGGCCCTGGGC
GTGGCCAACGGCCTCGACGCGAAGGTGCTGGCCGAGATCATGCGCCGCAGCTCCGGTGGCAACTGGGCGCTG
GAAGTCTACAACCCCTGGCCGGGGGTGATGGAGAACGCTCCGGCGTCGCGCGACTACAGCGGCGGCTTCATG
GCCCAGTTGATGGCCAAGGACCTCGGGCTGGCCCAGGAAGCCGCCCAGGCCAGCGCCAGCAGCACACCGATG
GGCAGCCTGGCGCTGAGCCTGTACCGTCTGCTGCTGAAGCAGGGCTATGCGGAGCGGGACTTTTCCGTGGTG
CAGAAATTGTTCGATCCGACCCAAGGCCAATAG
Translation:
MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGAGAARSARDAVQGADVVISMLPASQHVE
GLYLDDDGLLAHIAPGTLVLECSTIAPTSARKVHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDDEAL
EKARPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLDAKVLAEIMRRSSGGNWAL
EVYNPWPGVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVV
QKLFDPTQGQ*
AnnotationID:2707GeneID:2699
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 10:10:29
Gene Name:
Confidence Code:3
GeneProduct:probable 3-hydroxyisobutyrate dehydrogenase
Cell Localization:()
Synonyms:PA0743
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2084, KOG0409
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related ... Score: 282, 7e-77
KOG0409, Predicted dehydrogenase [General function pr... Score: 257, 2e-69







   
Genomic Context:






   
Comment:


















    ReferenceID:5401




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22546




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2699
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4423
                           PA0743_tr
                           translation of PA0743
                           298
                           98.65
                           99.32
                           0
                           1475.0
     

     
     
128571
                           gb|AAG04132.1|AE004509_7
                           (AE004509) probable 3-hydroxyisobutyrate dehydrogenase [Pseudomonas aeruginosa PAO1]
                           298
                           98.65
                           99.32
                           0
                           1475.0
     

     
     
128572
                           emb|CAE33125.1|
                           (BX640445) 3-hydroxyisobutyrate dehydrogenase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           298
                           65.77
                           78.18
                           1
                           962.0
     

     
     
128573
                           emb|CAE41737.1|
                           (BX640415) 3-hydroxyisobutyrate dehydrogenase [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           298
                           65.77
                           78.18
                           1
                           962.0
     

     
     
128574
                           emb|CAE36856.1|
                           (BX640427) 3-hydroxyisobutyrate dehydrogenase [Bordetella parapertussis]
                           298
                           65.43
                           77.85
                           1
                           952.0
     

     






      

          
GC ORFID: 45701How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0743Glimmer Score: 

          
Start: 107124Stop: 106228

          
Length: 897


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0743 translation of PA0743Homolog Bit Score 572.0

          
Other Homologs:  t_PA3569 (ORF: BLASTX 356.0), psyr_15may02_Scaffold2_revised_gene3515 (ORF: BLASTX 302.0), t_PA0743 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACAGATCGCCTTCATCGGCCTCGGCCACATGGGCGCGCCGATGGCCACCAACCTGCTCAAGGCCGGC 
TACCTGCTGAACGTCTTCGACCTGGTGCAGAGCGCCGTCGACGGCCTGGTCGCCGCCGGCGCCGGCGCCGCC 
CGCAGCGCCCGCGACGCGGTGCAGGGCGCCGACGTGGTCATCAGCATGCTGCCGGCCAGCCAGCACGTCGAA 
GGCCTGTACCTCGACGACGATGGCCTGCTCGCGCACATCGCCCCCGGCACCCTGGTGCTGGAATGCTCGACC 
ATCGCCCCGACCTCGGCGCGCAAGGTCCACGCCGCCGCCCGCGAGCGCGGCCTGGCGATGCTCGACGCGCCG 
GTGTCCGGCGGCACTGCCGGCGCGGCAGCCGGCACCCTGACCTTCATGGTCGGCGGCGACGACGAAGCCCTG 
GAGAAGGCCCGGCCGCTGTTCGAGGCCATGGGTCGCAACATCTTCCATGCCGGCCCCGACGGCGCCGGCCAG 
GTGGCCAAGGTGTGCAACAACCAGCTCCTCGCGGTGCTGATGATCGGTACCGCAGAAGCCATGGCCCTGGGC 
GTGGCCAACGGCCTCGACGCGAAGGTGCTGGCCGAGATCATGCGCCGCAGCTCCGGTGGCAACTGGGCGCTG 
GAAGTCTACAACCCCTGGCCGGGGGTGATGGAGAACGCTCCGGCGTCGCGCGACTACAGCGGCGGCTTCATG 
GCCCAGTTGATGGCCAAGGACCTCGGGCTGGCCCAGGAAGCCGCCCAGGCCAGCGCCAGCAGCACACCGATG 
GGCAGCCTGGCGCTGAGCCTGTACCGTCTGCTGCTGAAGCAGGGCTATGCGGAGCGGGACTTTTCCGTGGTG 
CAGAAATTGTTCGATCCGACCCAAGGCCAATAG