ViewGene

Locus Name:
GeneID:
Location:

GeneID:2697
TrivialName: PA14_66340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66340
PAO1 Ortholog Locus:PA5019
Sequence Length:837
Protein Length:278
Start: 5916688
Stop: 5915852
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08404.1|AE004914_5 (AE004914) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 277/278 (99%), Positives = 278/278 (100%)
Sequence:
ATGAACTATCGTCACGCTTACCACGCCGGCAACCATGCCGATGTCTTCAAGCACCTGGTGCTGGCGCGGATC
TTCGCCCTGCTGGGGCGCAAGGACACGCCGTACGCCTACCTGGACAGCCATTCCGGGGTCGGCCTCTACGAC
TTGCAGGGTGACGAGGCCAGCCGCACCGGCGAGTGGGAGCAGGGCATCGCCCGTCTGTGGGAGCGCGAAGGC
CTGCCCGAGCAACTGGACGATTACCTGGACGTGATCCGTCACCTGAATCCGGACGGCTCCCTGCGCTACTAC
CCGGGCTCGCCGGAGTTGGCGCGGCGCCTGACCCGCGCCCAGGACCGCGTGCTGCTCAACGAATTGCATCCC
GAGGACGGCCGCCTGCTCAAGGCCAACATGGCTGGCGAACGGCGGGTCGCCGTGCACCAGGGCGACGGTTGG
CTGCTGCCGCGGGCGTTCCTGCCGGCGCCGGAAAAGCGCGCGGTGCTGCTGATCGATCCGCCGTTCGAGCAG
GCCGACGAATTGCAGCGTTGTGTCGCTGCGCTCGACGAGGCGATCGGGCGGATGCGCCAGACGGTGGTGGTG
ATCTGGTATCCGATCAAGGACGAGCGCCAGCTCAAGCGTTTCTACCAGGCCCTGGAACGTAGCGTCGCGCCG
AAGCTGCTGCGTGCCGAGCTGCACGTGCATCCGATCGACGACGCCGAGCGTTTCAACGGCTCCGGGCTGGCC
ATCGTCAATCCGCCGTGGCCGCTGGAGGACGAACTGCGCGACCTGCTGCCCTGGCTGGCCGAGGTCATGGCC
CAGAGCCAGGGCGGCTGGCGTCTCGACTGGCTGGTGGCGGAATAG
Translation:
MNYRHAYHAGNHADVFKHLVLARIFALLGRKDTPYAYLDSHSGVGLYDLQGDEASRTGEWEQGIARLWEREG
LPEQLDDYLDVIRHLNPDGSLRYYPGSPELARRLTRAQDRVLLNELHPEDGRLLKANMAGERRVAVHQGDGW
LLPRAFLPAPEKRAVLLIDPPFEQADELQRCVAALDEAIGRMRQTVVVIWYPIKDERQLKRFYQALERSVAP
KLLRAELHVHPIDDAERFNGSGLAIVNPPWPLEDELRDLLPWLAEVMAQSQGGWRLDWLVAE*
AnnotationID:2705GeneID:2697
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 11:11:28
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5019
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO09584.1|AE016800_189 (AE016800) Protein involved in catabolism of external DNA [Vibrio
           vulnificus CMCP6]
          Length = 279

 Score =  249 bits (637), Expect = 9e-66
 Identities = 117/278 (42%), Positives = 179/278 (64%)

>gb|AAN82734.1|AE016768_152 (AE016768) Hypothetical protein yhiR [Escherichia coli CFT073]
          Length = 297

 Score =  246 bits (629), Expect = 8e-65
 Identities = 116/279 (41%), Positives = 173/279 (62%), Gaps = 1/279 (0%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:5397
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22542
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35010
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2697_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2697

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4421 PA5019_tr translation of PA5019 278 99.64 99.99 0 1476.0
128473 gb|AAG08404.1|AE004914_5 (AE004914) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 278 99.64 99.99 0 1476.0
128474 gb|AAO53948.1| (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 278 69.42 81.65 0 1077.0
128475 gb|AAN70512.1|AE016693_1 (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440] 278 67.62 80.93 0 1046.0
128476 gb|AAL42148.1| (AE009076) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] 289 47.05 61.59 13 661.0
GC ORFID: 45699How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5019Glimmer Score:
Start: 5180371Stop: 5179535
Length: 837
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA5019 translation of PA5019Homolog Bit Score 573.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6595 (ORF: BLASTX 420.0), t_PA5019 (ORF: GLIMMER)
GC ORF Sequence
ATGAACTATCGTCACGCTTACCACGCCGGCAACCATGCCGATGTCTTCAAGCACCTGGTGCTGGCGCGGATC
TTCGCCCTGCTGGGGCGCAAGGACACGCCGTACGCCTACCTGGACAGCCATTCCGGGGTCGGCCTCTACGAC
TTGCAGGGTGACGAGGCCAGCCGCACCGGCGAGTGGGAGCAGGGCATCGCCCGTCTGTGGGAGCGCGAAGGC
CTGCCCGAGCAACTGGACGATTACCTGGACGTGATCCGTCACCTGAATCCGGACGGCTCCCTGCGCTACTAC
CCGGGCTCGCCGGAGTTGGCGCGGCGCCTGACCCGCGCCCAGGACCGCGTGCTGCTCAACGAATTGCATCCC
GAGGACGGCCGCCTGCTCAAGGCCAACATGGCTGGCGAACGGCGGGTCGCCGTGCACCAGGGCGACGGTTGG
CTGCTGCCGCGGGCGTTCCTGCCGGCGCCGGAAAAGCGCGCGGTGCTGCTGATCGATCCGCCGTTCGAGCAG
GCCGACGAATTGCAGCGTTGTGTCGCTGCGCTCGACGAGGCGATCGGGCGGATGCGCCAGACGGTGGTGGTG
ATCTGGTATCCGATCAAGGACGAGCGCCAGCTCAAGCGTTTCTACCAGGCCCTGGAACGTAGCGTCGCGCCG
AAGCTGCTGCGTGCCGAGCTGCACGTGCATCCGATCGACGACGCCGAGCGTTTCAACGGCTCCGGGCTGGCC
ATCGTCAATCCGCCGTGGCCGCTGGAGGACGAACTGCGCGACCTGCTGCCCTGGCTGGCCGAGGTCATGGCC
CAGAGCCAGGGCGGCTGGCGTCTCGACTGGCTGGTGGCGGAATAG