ViewGene
Locus Name:
GeneID:
Location:

GeneID:2696
TrivialName: PA14_57300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57300
PAO1 Ortholog Locus:PA4409
Sequence Length:864
Protein Length:287
Start: 5106231
Stop: 5105368
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07797.1|AE004856_8 (AE004856) cell division protein FtsQ [Pseudomonas aeruginosa PAO1]
Identities = 287/287 (100%), Positives = 287/287 (100%)
Sequence:
ATGAACGGCGTACTGCTCCGTCATCAGCAACCCGGTGGACTCGGCCGCGCTCCGCGCAAGCCGATGCCGCGC
GGCGCCAGCCGTCTGGTGGCCAAGGAACCGCTGAGCGTGCGCCTGCCGAAAGCCGACTTCAGTTTCCTCAAG
TACCTGGCCTGGCCGCTGTTGCTGGCCGTTCTCGGCTATGGCGCCTATCGCGGCGCCGAGTACATCCTGCCG
TACGCCGACCGGCCGATCGCCAAGGTCAGTGTCGAGGGCGACCTCAGCTACATCAGCCAGCGCGCGGTGCAG
CAGCGGATTTCCCCGTACCTGGCGGCGAGCTTCTTCACCATCGACCTGGCGGGCATGCGCGGGCAACTGGAA
CAGATGCCCTGGATCGCCCACGCCGAGGTGCGCCGGGTGTGGCCGGACCAGGTGGTGATCCGCCTGGACGAG
CAACTGCCGATCGCCCGGTGGGGCGACGAAGCGCTGCTGAACAACCAGGGACAGGCTTTTACGCCAAAGGAG
CTGGCGAATTATGAACATCTGCCCCGCTTGCATGGTCCACAGCGGGCGCAACAGCAGGTGATGCAGCAATAC
CAGTTGCTCAGCCAGTTGCTGCGTCCCCTCGGGTTCTCCATTGCCCGCCTGGAAATGAGCGATCGCGGCGGT
TGGGCGCTGACCACGGCCCAGGGCGTCGAGATCCAGATCGGGCGCGACCACGTGGTAGACAAGATTCGCCGC
TTCGTAAGCATCTACGACAAGGCACTCAAAGATCAGATTTCGAACATTGCGCGGATCGACCTGCGTTACCCC
AACGGCCTCGCCGTTGCGTGGCGCGAGCCGGTCACGCCCGCGACGGTGGCCACGGCCAGCGCCGTGCAGTGA
Translation:
MNGVLLRHQQPGGLGRAPRKPMPRGASRLVAKEPLSVRLPKADFSFLKYLAWPLLLAVLGYGAYRGAEYILP
YADRPIAKVSVEGDLSYISQRAVQQRISPYLAASFFTIDLAGMRGQLEQMPWIAHAEVRRVWPDQVVIRLDE
QLPIARWGDEALLNNQGQAFTPKELANYEHLPRLHGPQRAQQQVMQQYQLLSQLLRPLGFSIARLEMSDRGG
WALTTAQGVEIQIGRDHVVDKIRRFVSIYDKALKDQISNIARIDLRYPNGLAVAWREPVTPATVATASAVQ*
AnnotationID:2704GeneID:2696
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 17:05:20
Gene Name:ftsQ
Confidence Code:2
GeneProduct:cell division septal protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1589,pfam03799
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57854.1| (AE016871) cell division protein FtsQ, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 289

 Score =  418 bits (1074), Expect = e-116
 Identities = 203/281 (72%), Positives = 240/281 (85%), Gaps = 7/281 (2%)

>gb|AAN66963.1|AE016324_13 (AE016779) cell division protein FtsQ [Pseudomonas putida KT2440]
          Length = 289

 Score =  413 bits (1061), Expect = e-115
 Identities = 201/290 (69%), Positives = 240/290 (82%), Gaps = 8/290 (2%)






 
Structural Features:
COG1589, FtsQ, Cell division septal protein 
[Cell envelope biogenesis, outer membrane]
CD-Length = 269 residues,  99.3% aligned
Score =  182 bits (462), Expect = 1e-46
Identities = 78/274 (28%), Positives = 121/274 (44%), Gaps = 11/274 (4%)

pfam03799, FtsQ, Cell division protein FtsQ. 
CD-Length = 223 residues, 100.0% aligned
Score =  157 bits (397), Expect = 4e-39
Identities = 67/224 (29%), Positives = 104/224 (46%), Gaps = 9/224 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5395




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22540




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:29466




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2696_cdd.html


    		




 
URL:

















    ReferenceID:32794




  
Author/Investigator(s):
        Azzolina BA, Yuan X, Anderson MS, El-Sherbeini M.





  
Title:
        The cell wall and cell division gene cluster in the Mra operon of Pseudomonas aeruginosa: cloning, production, and purification of active enzymes.




  
PubMed:
        11281713


MedLine:
        




    
Source:
Protein Expr Purif. 2001 Apr;21(3):393-400.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11281713









           
Homologs By Global Alignment 

           

       



     
Gene ID:2696
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4420
                           PA4409_tr
                           translation of PA4409
                           287
                           99.99
                           99.99
                           0
                           1478.0
     

     
     
128469
                           gb|AAG07797.1|AE004856_8
                           (AE004856) cell division protein FtsQ [Pseudomonas aeruginosa PAO1]
                           287
                           99.99
                           99.99
                           0
                           1478.0
     

     
     
128470
                           gb|AAF26457.1|
                           (U19797) FtsQ [Pseudomonas aeruginosa]
                           287
                           99.99
                           99.99
                           0
                           1478.0
     

     
     
128471
                           gb|AAO57854.1|
                           (AE016871) cell division protein FtsQ, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           294
                           70.06
                           82.65
                           12
                           1077.0
     

     
     
128472
                           gb|AAN66963.1|AE016324_13
                           (AE016779) cell division protein FtsQ [Pseudomonas putida KT2440]
                           292
                           68.83
                           82.19
                           8
                           1067.0
     

     






      

          
GC ORFID: 45698How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4409Glimmer Score: 

          
Start: 4369909Stop: 4369046

          
Length: 864


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4409 translation of PA4409Homolog Bit Score 573.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1131 (ORF: BLASTX 422.0), t_PA4409 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGGCGTACTGCTCCGTCATCAGCAACCCGGTGGACTCGGCCGCGCTCCGCGCAAGCCGATGCCGCGC 
GGCGCCAGCCGTCTGGTGGCCAAGGAACCGCTGAGCGTGCGCCTGCCGAAAGCCGACTTCAGTTTCCTCAAG 
TACCTGGCCTGGCCGCTGTTGCTGGCCGTTCTCGGCTATGGCGCCTATCGCGGCGCCGAGTACATCCTGCCG 
TACGCCGACCGGCCGATCGCCAAGGTCAGTGTCGAGGGCGACCTCAGCTACATCAGCCAGCGCGCGGTGCAG 
CAGCGGATTTCCCCGTACCTGGCGGCGAGCTTCTTCACCATCGACCTGGCGGGCATGCGCGGGCAACTGGAA 
CAGATGCCCTGGATCGCCCACGCCGAGGTGCGCCGGGTGTGGCCGGACCAGGTGGTGATCCGCCTGGACGAG 
CAACTGCCGATCGCCCGGTGGGGCGACGAAGCGCTGCTGAACAACCAGGGACAGGCTTTTACGCCAAAGGAG 
CTGGCGAATTATGAACATCTGCCCCGCTTGCATGGTCCACAGCGGGCGCAACAGCAGGTGATGCAGCAATAC 
CAGTTGCTCAGCCAGTTGCTGCGTCCCCTCGGGTTCTCCATTGCCCGCCTGGAAATGAGCGATCGCGGCGGT 
TGGGCGCTGACCACGGCCCAGGGCGTCGAGATCCAGATCGGGCGCGACCACGTGGTAGACAAGATTCGCCGC 
TTCGTAAGCATCTACGACAAGGCACTCAAAGATCAGATTTCGAACATTGCGCGGATCGACCTGCGTTACCCC 
AACGGCCTCGCCGTTGCGTGGCGCGAGCCGGTCACGCCCGCGACGGTGGCCACGGCCAGCGCCGTGCAGTGA