ViewGene

Locus Name:
GeneID:
Location:

GeneID:2695
TrivialName: PA14_33540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33540
PAO1 Ortholog Locus:PA2409
Sequence Length:906
Protein Length:301
Start: 2951931
Stop: 2951026
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05797.1|AE004668_7 (AE004668) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 301/301 (100%), Positives = 301/301 (100%)
Sequence:
ATGAACGACGCCTACGAACAACTGCGCCAGGCCGTCCAGGCCTGGGCCGCCGCCGGCTACCTGCCGGAGACC
CTGGCCTACGGCTTCGTCGTCAACGCGCTCCTCGCCGGCCTGCTGATCGGCCCGGTGCTCGGCGGCCTCGGC
ACCCTGGTGGTGGTCAAGCGCTTCGCCTTCTTCTCCGAGGCGGTCGGCCACGCCGCGCTCACCGGCGTGGCC
ATCGGCATCCTCCTCGGCGAGCCCTACACCGGGCCCTACGGCAGCCTGTTCGGCTACTGCCTGCTGTTCGGC
GTCCTGCTCAACTACCTGCGCAACCGCACCGGCCTGGCCCCGGACACCCTGATCGGGGTGTTCCTCTCGGTG
TCCCTGGCGCTCGGCGCCAGCCTGCTGCTGGTGCTGGCGGGCAAGATCAACGTGCATATCCTCGAGAACGTG
CTGTTCGGCTCGGTGCTGACCGTGAACGGCCATGACCTCGCGGTGCTGGCGGCGGTCGCCGTGCTGGTGCCG
TGCCTGGCCCTGCCGCTGTACAACCGCATCATGCTGGCCAGCTTCAACCCGCAACTGGCGGCGGTGCGCGGG
GTCGCGGTGAAGAGCCTGGACTACCTGTTCGTGGCCCTGGTGACCCTGGTCACCGTCGCCGCGGTGAAAGTG
ATCGGCGCGATCCTGGTCGGTGCCCTGCTGGTGATCCCGGCGGCGGCGGCGCGCCTGGTTAGCCAGTCGCTG
AAAGGGTTCTTCTGGCTGGCGGTGCTGATCGCCACCGTCAGCACGCTGGCCGGTATCCTGCTGCCGATCATG
TTCGACCTGCCGATTCCCTCCGGCGCCGCGATCATCCTGGTCGCCGGCCTGGCCTTCGGCCTCGCCGCCATC
GCTCGCGGCTGCCTGCCGCACCTGAAAGGAACCCCCGGATGA
Translation:
MNDAYEQLRQAVQAWAAAGYLPETLAYGFVVNALLAGLLIGPVLGGLGTLVVVKRFAFFSEAVGHAALTGVA
IGILLGEPYTGPYGSLFGYCLLFGVLLNYLRNRTGLAPDTLIGVFLSVSLALGASLLLVLAGKINVHILENV
LFGSVLTVNGHDLAVLAAVAVLVPCLALPLYNRIMLASFNPQLAAVRGVAVKSLDYLFVALVTLVTVAAVKV
IGAILVGALLVIPAAAARLVSQSLKGFFWLAVLIATVSTLAGILLPIMFDLPIPSGAAIILVAGLAFGLAAI
ARGCLPHLKGTPG*
AnnotationID:2703GeneID:2695
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 10:10:57
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:PA2409
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative ABC-type Mn2+/Zn2+ transport systems, permease components
Functional Category Confidence Code:5
COGs:COG1108,pfam00950
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69397.1|AE016576_7 (AE016788) cation ABC transporter, permease protein, putative
           [Pseudomonas putida KT2440]
          Length = 299

 Score =  493 bits (1269), Expect = e-139
 Identities = 258/297 (86%), Positives = 276/297 (92%)

>gb|AAO55656.1| (AE016863) cation ABC transporter, permease protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 299

 Score =  489 bits (1260), Expect = e-138
 Identities = 258/297 (86%), Positives = 274/297 (92%)

>gb|AAL93909.1| (AE010483) Manganese transport system membrane protein mntB
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 297

 Score =  326 bits (835), Expect = 1e-88
 Identities = 154/285 (54%), Positives = 221/285 (77%)
Structural Features:
COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components 
[Inorganic ion transport and metabolism]
CD-Length = 274 residues,  98.5% aligned
Score =  150 bits (380), Expect = 3e-37
Identities = 117/277 (42%), Positives = 164/277 (59%), Gaps = 7/277 (2%)

pfam00950, ABC-3, ABC 3 transport family
CD-Length = 258 residues,  99.6% aligned
Score =  129 bits (327), Expect = 3e-31
Identities = 97/264 (36%), Positives = 151/264 (57%), Gaps = 7/264 (2%)
Genomic Context:
Comment:
ReferenceID:5393
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22538
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32953
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2695_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2695

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4419 PA2409_tr translation of PA2409 301 99.99 99.99 0 1477.0
128464 gb|AAG05797.1|AE004668_7 (AE004668) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1] 301 99.99 99.99 0 1477.0
128466 gb|AAO55656.1| (AE016863) cation ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000] 301 86.04 91.69 2 1255.0
128465 gb|AAN69397.1|AE016576_7 (AE016788) cation ABC transporter, permease protein, putative [Pseudomonas putida KT2440] 301 85.71 91.69 2 1266.0
128467 gb|AAL93909.1| (AE010483) Manganese transport system membrane protein mntB [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] 302 51.32 74.17 6 825.0
GC ORFID: 45697How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2409Glimmer Score:
Start: 2001985Stop: 2002890
Length: 906
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2409 translation of PA2409Homolog Bit Score 573.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene486 (ORF: BLASTX 492.0), t_PA2409 (ORF: GLIMMER)
GC ORF Sequence
ATGAACGACGCCTACGAACAACTGCGCCAGGCCGTCCAGGCCTGGGCCGCCGCCGGCTACCTGCCGGAGACC
CTGGCCTACGGCTTCGTCGTCAACGCGCTCCTCGCCGGCCTGCTGATCGGCCCGGTGCTCGGCGGCCTCGGC
ACCCTGGTGGTGGTCAAGCGCTTCGCCTTCTTCTCCGAGGCGGTCGGCCACGCCGCGCTCACCGGCGTGGCC
ATCGGCATCCTCCTCGGCGAGCCCTACACCGGGCCCTACGGCAGCCTGTTCGGCTACTGCCTGCTGTTCGGC
GTCCTGCTCAACTACCTGCGCAACCGCACCGGCCTGGCCCCGGACACCCTGATCGGGGTGTTCCTCTCGGTG
TCCCTGGCGCTCGGCGCCAGCCTGCTGCTGGTGCTGGCGGGCAAGATCAACGTGCATATCCTCGAGAACGTG
CTGTTCGGCTCGGTGCTGACCGTGAACGGCCATGACCTCGCGGTGCTGGCGGCGGTCGCCGTGCTGGTGCCG
TGCCTGGCCCTGCCGCTGTACAACCGCATCATGCTGGCCAGCTTCAACCCGCAACTGGCGGCGGTGCGCGGG
GTCGCGGTGAAGAGCCTGGACTACCTGTTCGTGGCCCTGGTGACCCTGGTCACCGTCGCCGCGGTGAAAGTG
ATCGGCGCGATCCTGGTCGGTGCCCTGCTGGTGATCCCGGCGGCGGCGGCGCGCCTGGTTAGCCAGTCGCTG
AAAGGGTTCTTCTGGCTGGCGGTGCTGATCGCCACCGTCAGCACGCTGGCCGGTATCCTGCTGCCGATCATG
TTCGACCTGCCGATTCCCTCCGGCGCCGCGATCATCCTGGTCGCCGGCCTGGCCTTCGGCCTCGCCGCCATC
GCTCGCGGCTGCCTGCCGCACCTGAAAGGAACCCCCGGATGA