ViewGene
Locus Name:
GeneID:
Location:

GeneID:2694
TrivialName: PA14_35070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35070
PAO1 Ortholog Locus:PA2281
Sequence Length:855
Protein Length:284
Start: 3122614
Stop: 3123468
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05669.1|AE004653_12 (AE004653) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 283/284 (99%), Positives = 284/284 (100%)
Sequence:
ATGCTCGGCAGCGCCACCGGTCACTACCAGGCGCGGACGGTGCGCCCGTCGATGCAGTATTTCGATTGCGAC
CTGAGCTTCACCGAGCCGCTGCGAACCCACAAGGTGCTGCCGGAAGGCCTGTGCATCGTGCAGATGTTCGAC
GGCCAGTGGCGGCACAGCGTCGACGGCGGCGAGCCTTATCTGTACAACCTGGGCGGTCCTTCGGTGCTCGGC
ACCGGCGAGCCGATGGAAGCCTTCGACATCCTGCCGGCGGGCAGCCGCGTGCGCCTGGGTGGGCTGCGGATC
GCCGCCAGCTACCTGGAGGAGGAACTGGAAACCGGCGATGGCGCCCTGCGGCCGCTGGCGCGGCTGAAGGGC
GACGGCGCGAGCTTCACCCAGTTGTCCCGTTGCGGCGCCATCACCGCCCTGTTCGAGCGCCTCTACCAGAAT
CCATACCGCGGCGCCCTCGGACGCCTGCACGAAGAGAGCCTGACCTTGGGCCTGCTGGTGGAGCTGGCCGCC
TACCTGGGTGGCGCGGACCTTCGTCGCGCGCGCACCCCACGCGCCCAGCGCGACCTGGCCCACGAAGCGCGC
CGCCTGCTGGAGGCGAACCTCGGTGAGCCGCCGGCCAGCCTCGAACTGGCGCGCCAACTGGGGGTCGGCGAA
ACCACCCTGCGGCGGATCTTCAGGAACGAGTTCGGTCGCTCGATGTTGCAGTACGTCCGCGACCGGCGTCTC
GAGATCGGCCGGCAGATGGTCCGCGAGGGTCGCTGGCAGATCGCGCAGATAGCCTATCGCCTGGGTTACTCC
AGTCCGGAAAACTTCACCCATGCCTACCGCGCGCGCTTCGGCCATCCGCCGGGGCGCGAGTGA
Translation:
MLGSATGHYQARTVRPSMQYFDCDLSFTEPLRTHKVLPEGLCIVQMFDGQWRHSVDGGEPYLYNLGGPSVLG
TGEPMEAFDILPAGSRVRLGGLRIAASYLEEELETGDGALRPLARLKGDGASFTQLSRCGAITALFERLYQN
PYRGALGRLHEESLTLGLLVELAAYLGGADLRRARTPRAQRDLAHEARRLLEANLGEPPASLELARQLGVGE
TTLRRIFRNEFGRSMLQYVRDRRLEIGRQMVREGRWQIAQIAYRLGYSSPENFTHAYRARFGHPPGRE*
AnnotationID:2702GeneID:2694
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 09:09:16
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA2281
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2207,smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
Length = 127
Score = 86.8 bits (214), Expect = 6e-18
Identities = 41/107 (38%), Positives = 56/107 (52%)

smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues,  91.7% aligned
Score = 80.6 bits (199), Expect = 2e-16
Identities = 31/77 (40%), Positives = 48/77 (62%)








   
Genomic Context:






   
Comment:


















    ReferenceID:5391




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22536




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38061




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2694_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2694
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4418
                           PA2281_tr
                           translation of PA2281
                           284
                           99.64
                           99.99
                           0
                           1476.0
     

     
     
128463
                           gb|AAG05669.1|AE004653_12
                           (AE004653) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           284
                           99.64
                           99.99
                           0
                           1476.0
     

     






      

          
GC ORFID: 45696How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2281Glimmer Score: 

          
Start: 1831302Stop: 1830448

          
Length: 855


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2281 translation of PA2281Homolog Bit Score 573.0

          
Other Homologs:  t_PA2281 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCGGCAGCGCCACCGGTCACTACCAGGCGCGGACGGTGCGCCCGTCGATGCAGTATTTCGATTGCGAC 
CTGAGCTTCACCGAGCCGCTGCGAACCCACAAGGTGCTGCCGGAAGGCCTGTGCATCGTGCAGATGTTCGAC 
GGCCAGTGGCGGCACAGCGTCGACGGCGGCGAGCCTTATCTGTACAACCTGGGCGGTCCTTCGGTGCTCGGC 
ACCGGCGAGCCGATGGAAGCCTTCGACATCCTGCCGGCGGGCAGCCGCGTGCGCCTGGGTGGGCTGCGGATC 
GCCGCCAGCTACCTGGAGGAGGAACTGGAAACCGGCGATGGCGCCCTGCGGCCGCTGGCGCGGCTGAAGGGC 
GACGGCGCGAGCTTCACCCAGTTGTCCCGTTGCGGCGCCATCACCGCCCTGTTCGAGCGCCTCTACCAGAAT 
CCATACCGCGGCGCCCTCGGACGCCTGCACGAAGAGAGCCTGACCTTGGGCCTGCTGGTGGAGCTGGCCGCC 
TACCTGGGTGGCGCGGACCTTCGTCGCGCGCGCACCCCACGCGCCCAGCGCGACCTGGCCCACGAAGCGCGC 
CGCCTGCTGGAGGCGAACCTCGGTGAGCCGCCGGCCAGCCTCGAACTGGCGCGCCAACTGGGGGTCGGCGAA 
ACCACCCTGCGGCGGATCTTCAGGAACGAGTTCGGTCGCTCGATGTTGCAGTACGTCCGCGACCGGCGTCTC 
GAGATCGGCCGGCAGATGGTCCGCGAGGGTCGCTGGCAGATCGCGCAGATAGCCTATCGCCTGGGTTACTCC 
AGTCCGGAAAACTTCACCCATGCCTACCGCGCGCGCTTCGGCCATCCGCCGGGGCGCGAGTGA