ViewGene
Locus Name:
GeneID:
Location:

GeneID:2693
TrivialName: PA14_54710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54710
PAO1 Ortholog Locus:PA0739
Sequence Length:915
Protein Length:304
Start: 4851251
Stop: 4852165
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04128.1|AE004509_3 (AE004509) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 293/304 (96%), Positives = 295/304 (97%)
Sequence:
ATGAGCGATCTACGCCAGTTCCGCCACTTCGTCGCCCTCGCCGAGCACGGCCACTATGCCCGCGCCGCCGAA
GCGGTGAATCTCAGCCAGCCGGCGCTGTCCCGCAGCATCCAGGCGCTGGAGGGACAGTTGGGTTGCACCCTG
GTGGAGCGCGGCAGCCGCGGCGTGGCCCTCACGGCCCACGGCCGGCTGGTGCTGGAACACGCTCGGCGCCTG
CTGGCCGGGCATCGCGCACTGCACAACGCGGTAAGCCAACTGGGCAATCTCGACAGCGGCGAGCTACGCCTG
GGCGGCGGTCCCTTCCCCGCCGCACGGCTGTTGCCCGAGGCACTGGCCAGTTTCTCCAGCGCCCACCCACGC
GTGCGCGTCGCACTGCTCATCGAGGACTGGCAGACCCTGCGCCAGCGCCTGCTGGATGACGCCGTCGAACTC
TTCGTCGCCGATATCCGCGAGCTGCAAGGCGATCCGCAGTTGCGCATCCACCCGCTACGCGAGCATCCCGGC
GTACTCTTCTGCCGCCCCGGCCATCCGCTGCTGGGTCTGGAGCGGCCGAGCGCCGGGCAATTGGCCGATTAC
CCGCTGGCCGGCCCGCGTCTGCCCGCGGAAGTCCGCGGCGACCTGGCGCGCCTGCTGCAACGCGACGAACCG
CTCGGCATACAGTGCGACGACGTGCTAATGCTCAAGGGCCTGGTCGGCTCCAGCGAGCTGATCAGCCTGGCG
CCCTGGGACGTGGTTGCCGCCGACGTCGAGGCCGGCCGCCTGGCGCTGCTGCCCTGGCCCGCCGGCGCCGAG
CCCGCCCGCGCCAAGGGCTCCGCCTACGGTCTGGTCAGCCGTGCCGGCCGCAGCCTGTCGCCGGCCGCGGCA
GTGTTCGTCGAGCGGGTGCTGGAACAGGACCGGCGCTTCGCCGCCACCTGA
Translation:
MSDLRQFRHFVALAEHGHYARAAEAVNLSQPALSRSIQALEGQLGCTLVERGSRGVALTAHGRLVLEHARRL
LAGHRALHNAVSQLGNLDSGELRLGGGPFPAARLLPEALASFSSAHPRVRVALLIEDWQTLRQRLLDDAVEL
FVADIRELQGDPQLRIHPLREHPGVLFCRPGHPLLGLERPSAGQLADYPLAGPRLPAEVRGDLARLLQRDEP
LGIQCDDVLMLKGLVGSSELISLAPWDVVAADVEAGRLALLPWPAGAEPARAKGSAYGLVSRAGRSLSPAAA
VFVERVLEQDRRFAAT*
AnnotationID:2701GeneID:2693
AnnotatorUID: danlee
Modification Date/Time: 2004-03-26 16:04:42
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:(1) Cytoplasmic
Synonyms:PA0739
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583, pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription] Score: 115, 1e-26
pfam03466, LysR_substrate, LysR substrate binding domain. The ... Score: 94.7, 2e-20






   
Genomic Context:






   
Comment:


















    ReferenceID:5389




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22534




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2693
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4415
                           PA0739_tr
                           translation of PA0739
                           304
                           96.38
                           97.03
                           0
                           1477.0
     

     
     
128459
                           gb|AAG04128.1|AE004509_3
                           (AE004509) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           304
                           96.38
                           97.03
                           0
                           1477.0
     

     
     
128460
                           gb|AAA25988.1|
                           (M86744) positive transcriptional control factor [Pseudomonas sp.]
                           309
                           64.07
                           75.40
                           8
                           967.0
     

     
     
4416
                           PA0191_tr
                           translation of PA0191
                           309
                           41.10
                           61.81
                           9
                           600.0
     

     
     
128461
                           gb|AAG03581.1|AE004457_2
                           (AE004457) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           309
                           41.10
                           61.81
                           9
                           600.0
     

     






      

          
GC ORFID: 45695How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0739Glimmer Score: 

          
Start: 102656Stop: 101742

          
Length: 915


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0739 translation of PA0739Homolog Bit Score 573.0

          
Other Homologs:  t_PA0191 (ORF: BLASTX 235.0), t_PA2334 (ORF: BLASTX 204.0), t_PA0739 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGATCTACGCCAGTTCCGCCACTTCGTCGCCCTCGCCGAGCACGGCCACTATGCCCGCGCCGCCGAA 
GCGGTGAATCTCAGCCAGCCGGCGCTGTCCCGCAGCATCCAGGCGCTGGAGGGACAGTTGGGTTGCACCCTG 
GTGGAGCGCGGCAGCCGCGGCGTGGCCCTCACGGCCCACGGCCGGCTGGTGCTGGAACACGCTCGGCGCCTG 
CTGGCCGGGCATCGCGCACTGCACAACGCGGTAAGCCAACTGGGCAATCTCGACAGCGGCGAGCTACGCCTG 
GGCGGCGGTCCCTTCCCCGCCGCACGGCTGTTGCCCGAGGCACTGGCCAGTTTCTCCAGCGCCCACCCACGC 
GTGCGCGTCGCACTGCTCATCGAGGACTGGCAGACCCTGCGCCAGCGCCTGCTGGATGACGCCGTCGAACTC 
TTCGTCGCCGATATCCGCGAGCTGCAAGGCGATCCGCAGTTGCGCATCCACCCGCTACGCGAGCATCCCGGC 
GTACTCTTCTGCCGCCCCGGCCATCCGCTGCTGGGTCTGGAGCGGCCGAGCGCCGGGCAATTGGCCGATTAC 
CCGCTGGCCGGCCCGCGTCTGCCCGCGGAAGTCCGCGGCGACCTGGCGCGCCTGCTGCAACGCGACGAACCG 
CTCGGCATACAGTGCGACGACGTGCTAATGCTCAAGGGCCTGGTCGGCTCCAGCGAGCTGATCAGCCTGGCG 
CCCTGGGACGTGGTTGCCGCCGACGTCGAGGCCGGCCGCCTGGCGCTGCTGCCCTGGCCCGCCGGCGCCGAG 
CCCGCCCGCGCCAAGGGCTCCGCCTACGGTCTGGTCAGCCGTGCCGGCCGCAGCCTGTCGCCGGCCGCGGCA 
GTGTTCGTCGAGCGGGTGCTGGAACAGGACCGGCGCTTCGCCGCCACCTGA