ViewGene
Locus Name:
GeneID:
Location:

GeneID:2692
TrivialName: PA14_03070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03070
PAO1 Ortholog Locus:PA0248
Sequence Length:867
Protein Length:288
Start: 270738
Stop: 271604
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03637.1|AE004463_2 (AE004463) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 286/288 (99%), Positives = 286/288 (99%)
Sequence:
ATGACGGATTCCACCCGCGACGTCCCGGTGTTCAAGCTCTACGGCGCGCCCCTCGAATGGCCGACCCCGGAC
CTGCTGCACTGCGAGTCGATCCCCGCCCGCAGTCGCCTGCACGACTGGGAGATCAAGCCGCACCGGCATGCC
GATCTCGCTCAGTTGCTCTACGTGCGCAAGGGCTGGGCGCAGCTCCAGGTCGAGGGCGAGCCGACTCGCGTC
GAGCAGCCCTCCATCCAGTTCGTACCGCCGTTGTGCATCCATGGCTTCCAGTTCTCCGAGCGCATCGACGGC
TACGTGCTGACGCTCGCCGCACCGTTGCTGGCCCGCTTGCAGGCGCACCTCGGCGCGCAGCGCCAGGCGCTG
GAAGCGCCGGGGCTGTACCCGGTGGGCGCGTACCGGCGCTATATCGACACGCTGTTCGACGCCATAGACGGC
GAGTACGCCGGCGCTGCGCCGGCGCGCGAGCTGTTGTTGCAGTCGCTGATCGGCGTGCTGGCGGTGTGGCTG
GGGCGGCAGGTGATGGTCCGGCGGGCGGAGGCACGGCCGGGTCGTGGTCAGGAATACCTATCGGCCTTTTCG
CAACTGGTCGAGCGGCATTTCCGCGAGCACCTGGGAATCGACGAGTACGCGCGTCGCCTGGGCATCTCCCCG
GCACACCTGAACAGCGTGGCGCGCCGCCTCAGCGGGCAGACCGCACTGGGCATCGTGCACCAGCGCCTGCTG
CTGGAGGCCAAGCGCGACCTGGTCTACACGGCGATGACGGTGAACGAGATCGCCGACCGCCTCGGCTTCAGC
GAGCCGGCCTACTTCACCCGTTTCTTCAAGCGCCTGAGCGGCGTCTCGCCGAGCGTCTTCCGCAAGGGCGAC
TAG
Translation:
MTDSTRDVPVFKLYGAPLEWPTPDLLHCESIPARSRLHDWEIKPHRHADLAQLLYVRKGWAQLQVEGEPTRV
EQPSIQFVPPLCIHGFQFSERIDGYVLTLAAPLLARLQAHLGAQRQALEAPGLYPVGAYRRYIDTLFDAIDG
EYAGAAPARELLLQSLIGVLAVWLGRQVMVRRAEARPGRGQEYLSAFSQLVERHFREHLGIDEYARRLGISP
AHLNSVARRLSGQTALGIVHQRLLLEAKRDLVYTAMTVNEIADRLGFSEPAYFTRFFKRLSGVSPSVFRKGD
*
AnnotationID:2700GeneID:2692
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 19:07:59
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:pobR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2207,smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAB43482.1| (Y18527) pobR regulator [Pseudomonas sp.]
          Length = 293

 Score =  310 bits (793), Expect = 8e-84
 Identities = 154/281 (54%), Positives = 205/281 (72%), Gaps = 4/281 (1%)

>gb|AAO55426.1| (AE016862) transcriptional regulator PobR [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 289

 Score =  298 bits (763), Expect = 2e-80
 Identities = 150/281 (53%), Positives = 195/281 (69%), Gaps = 4/281 (1%)








 
Structural Features:
COG2207, AraC, AraC-type DNA-binding domain-containing proteins 
[Transcription]
CD-Length = 127 residues,  81.9% aligned
Score = 83.0 bits (204), Expect = 4e-17
Identities = 39/104 (37%), Positives = 63/104 (60%)

smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues,  98.8% aligned
Score = 81.8 bits (202), Expect = 1e-16
Identities = 35/83 (42%), Positives = 53/83 (63%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5387




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22532




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33608




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2692_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2692
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4414
                           PA0248_tr
                           translation of PA0248
                           288
                           99.30
                           99.30
                           0
                           1480.0
     

     
     
128450
                           gb|AAG03637.1|AE004463_2
                           (AE004463) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           288
                           99.30
                           99.30
                           0
                           1480.0
     

     
     
128451
                           emb|CAA54301.1|
                           (X76994) pobR [Pseudomonas aeruginosa]
                           298
                           84.56
                           85.57
                           20
                           1233.0
     

     
     
128452
                           gb|AAF03756.1|AF036244_2
                           (AF036244) regulatory protein [Azotobacter chroococcum]
                           306
                           53.92
                           68.62
                           21
                           852.0
     

     
     
128453
                           emb|CAB43482.1|
                           (Y18527) pobR regulator [Pseudomonas sp.]
                           297
                           52.18
                           70.03
                           13
                           791.0
     

     






      

          
GC ORFID: 45694How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0248Glimmer Score: 

          
Start: 6072079Stop: 6072945

          
Length: 867


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0248 translation of PA0248Homolog Bit Score 574.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7876 (ORF: BLASTX 308.0), t_PA0248 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGGATTCCACCCGCGACGTCCCGGTGTTCAAGCTCTACGGCGCGCCCCTCGAATGGCCGACCCCGGAC 
CTGCTGCACTGCGAGTCGATCCCCGCCCGCAGTCGCCTGCACGACTGGGAGATCAAGCCGCACCGGCATGCC 
GATCTCGCTCAGTTGCTCTACGTGCGCAAGGGCTGGGCGCAGCTCCAGGTCGAGGGCGAGCCGACTCGCGTC 
GAGCAGCCCTCCATCCAGTTCGTACCGCCGTTGTGCATCCATGGCTTCCAGTTCTCCGAGCGCATCGACGGC 
TACGTGCTGACGCTCGCCGCACCGTTGCTGGCCCGCTTGCAGGCGCACCTCGGCGCGCAGCGCCAGGCGCTG 
GAAGCGCCGGGGCTGTACCCGGTGGGCGCGTACCGGCGCTATATCGACACGCTGTTCGACGCCATAGACGGC 
GAGTACGCCGGCGCTGCGCCGGCGCGCGAGCTGTTGTTGCAGTCGCTGATCGGCGTGCTGGCGGTGTGGCTG 
GGGCGGCAGGTGATGGTCCGGCGGGCGGAGGCACGGCCGGGTCGTGGTCAGGAATACCTATCGGCCTTTTCG 
CAACTGGTCGAGCGGCATTTCCGCGAGCACCTGGGAATCGACGAGTACGCGCGTCGCCTGGGCATCTCCCCG 
GCACACCTGAACAGCGTGGCGCGCCGCCTCAGCGGGCAGACCGCACTGGGCATCGTGCACCAGCGCCTGCTG 
CTGGAGGCCAAGCGCGACCTGGTCTACACGGCGATGACGGTGAACGAGATCGCCGACCGCCTCGGCTTCAGC 
GAGCCGGCCTACTTCACCCGTTTCTTCAAGCGCCTGAGCGGCGTCTCGCCGAGCGTCTTCCGCAAGGGCGAC 
TAG