ViewGene

Locus Name:
GeneID:
Location:

GeneID:2691
TrivialName: PA14_12610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12610
PAO1 Ortholog Locus:PA3963
Sequence Length:897
Protein Length:298
Start: 1082047
Stop: 1081151
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07350.1|AE004814_5 (AE004814) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 298/298 (100%), Positives = 298/298 (100%)
Sequence:
ATGAGTCCCGATTCCCCCCACGCCCGCCTGCTGCGCCTGGCCACCCTGGCCTCGCTCGGTGTCGCCGTCACC
CTGGTCATCGGCAAGGCCATTGCCTGGTGGCTGAGCGGTTCGGTGAGCCTGCTCGCCGGCCTCACCGACTCC
CTGCTGGACAGTGCCGCCTCGCTGCTCAACCTGCTGGCAGTGCACTATTCGCTGCGCCCGGCCGACGACGAC
CACCGCTACGGCCACGGCAAGGCCGAGGCCCTGGCCGGCCTGGCCCAGGCGATGTTCATCGGTGCCAGCGCG
GTGCTGGTGGCTATCCAGGCGGTCGAGCAATTGCGCGACCCGCAGCCCCTCGGCGCGGCCACCTGGGGCATC
GCGGTGATGCTGCTGTCGCTGCTGCTCACGGCCCTTCTCCTGGCCTTCCAGACCCACGTCATCCGCCGCACC
GGTTCCACCGCGATACGCGCCGACTCGCTGCACTACCGCTCGGACCTGCTGCTCAACGCCAGCATCCTCGTG
GCACTGCTCCTGGCCCGCTACGGCTGGCCACAGAGCGACGGCCTGTTCGGCCTGGGCATCGCCCTGTACATC
CTCTGGAGCGCCCTGCAGATCGCTCGCGAGTCGGTGTCGATCCTGATGGACCGGGAACTGCCTACCGACATC
AGCGAGCGCATGCGCGAACTCGCCTGCAGCGTGCCGGGAGTGCTCGGCGCGCACGACGTGCGCACGCGGATT
TCCGGCAACCACTGGTTCGTCCAGTTGCACCTCGAGCTGCCCGGCGAGCTGAGCCTGTCGGTGGCCCACGCC
CTGACCGACCGCGCAGTGCTGGCGATCAAGCGCGAATACCCGAAGGCCGAGGTGCTGATCCATGCCGACCCG
CAGGAAGTGGTCGGCAAGGAAACCGTCAGTTGA
Translation:
MSPDSPHARLLRLATLASLGVAVTLVIGKAIAWWLSGSVSLLAGLTDSLLDSAASLLNLLAVHYSLRPADDD
HRYGHGKAEALAGLAQAMFIGASAVLVAIQAVEQLRDPQPLGAATWGIAVMLLSLLLTALLLAFQTHVIRRT
GSTAIRADSLHYRSDLLLNASILVALLLARYGWPQSDGLFGLGIALYILWSALQIARESVSILMDRELPTDI
SERMRELACSVPGVLGAHDVRTRISGNHWFVQLHLELPGELSLSVAHALTDRAVLAIKREYPKAEVLIHADP
QEVVGKETVS*
AnnotationID:2699GeneID:2691
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 18:06:09
Gene Name:
Confidence Code:3
GeneProduct:probable cation efflux family protein
Cell Localization:()
Synonyms:PA3963 , cepA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0053, pfam01545, KOG1485, COG1230
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
dbj|BAB89353.1| (AB073019) cepA cation efflux pump A [Klebsiella pneumoniae]
Length: 302
PctIdentity: 46.35
PctSimilarity: 66.55
Gaps: 6
Score: 702.0
Structural Features:
gnl|CDD|9928 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Length = 304
Score =  266 bits (681), Expect = 5e-72
Identities = 120/296 (40%), Positives = 181/296 (61%), Gaps = 1/296 (0%)
Genomic Context:
Comment:
ReferenceID:5385
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22530
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2691

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4413 PA3963_tr translation of PA3963 298 99.99 99.99 0 1479.0
128426 gb|AAG07350.1|AE004814_5 (AE004814) probable transporter [Pseudomonas aeruginosa PAO1] 298 99.99 99.99 0 1479.0
128427 gb|AAO58220.1| (AE016873) cation efflux family protein [Pseudomonas syringae pv. tomato str. DC3000] 298 73.48 84.56 1 1111.0
128428 gb|AAN70344.1|AE016676_4 (AE016792) cation efflux family protein [Pseudomonas putida KT2440] 299 67.89 78.59 10 1026.0
128430 emb|CAC88943.1| (AJ414141) putative integral membrane protein [Yersinia pestis CO92] 302 48.34 67.21 6 711.0
GC ORFID: 45693How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3963Glimmer Score:
Start: 3871891Stop: 3872787
Length: 897
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3963 translation of PA3963Homolog Bit Score 574.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5717 (ORF: BLASTX 427.0), t_PA3963 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTCCCGATTCCCCCCACGCCCGCCTGCTGCGCCTGGCCACCCTGGCCTCGCTCGGTGTCGCCGTCACC
CTGGTCATCGGCAAGGCCATTGCCTGGTGGCTGAGCGGTTCGGTGAGCCTGCTCGCCGGCCTCACCGACTCC
CTGCTGGACAGTGCCGCCTCGCTGCTCAACCTGCTGGCAGTGCACTATTCGCTGCGCCCGGCCGACGACGAC
CACCGCTACGGCCACGGCAAGGCCGAGGCCCTGGCCGGCCTGGCCCAGGCGATGTTCATCGGTGCCAGCGCG
GTGCTGGTGGCTATCCAGGCGGTCGAGCAATTGCGCGACCCGCAGCCCCTCGGCGCGGCCACCTGGGGCATC
GCGGTGATGCTGCTGTCGCTGCTGCTCACGGCCCTTCTCCTGGCCTTCCAGACCCACGTCATCCGCCGCACC
GGTTCCACCGCGATACGCGCCGACTCGCTGCACTACCGCTCGGACCTGCTGCTCAACGCCAGCATCCTCGTG
GCACTGCTCCTGGCCCGCTACGGCTGGCCACAGAGCGACGGCCTGTTCGGCCTGGGCATCGCCCTGTACATC
CTCTGGAGCGCCCTGCAGATCGCTCGCGAGTCGGTGTCGATCCTGATGGACCGGGAACTGCCTACCGACATC
AGCGAGCGCATGCGCGAACTCGCCTGCAGCGTGCCGGGAGTGCTCGGCGCGCACGACGTGCGCACGCGGATT
TCCGGCAACCACTGGTTCGTCCAGTTGCACCTCGAGCTGCCCGGCGAGCTGAGCCTGTCGGTGGCCCACGCC
CTGACCGACCGCGCAGTGCTGGCGATCAAGCGCGAATACCCGAAGGCCGAGGTGCTGATCCATGCCGACCCG
CAGGAAGTGGTCGGCAAGGAAACCGTCAGTTGA