ViewGene
Locus Name:
GeneID:
Location:

GeneID:2690
TrivialName: PA14_15100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15100
PAO1 Ortholog Locus:PA3787
Sequence Length:849
Protein Length:282
Start: 1281606
Stop: 1280758
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07174.1|AE004797_9 (AE004797) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 282/282 (100%), Positives = 282/282 (100%)
Sequence:
ATGCCCCGCACCCTAGCCTTCGTTTCCACGCTGTTGCTCGCCGCTTTCTGCGCCCTGCCCGCCCAAGCCGAC
AGCTTCATCATGCGCCTGCTGAACAAGCCGGTGCCCGGCGGGGTGGCGGTGGTCGACCTCGGCGAGGAAGGC
CCGCCGCcGcgGGCCTTCTACCAGGGCAAGCCGGTGCTGGTGGTGCGCGAGGAAGGCCGCCGCTGGATCGCC
GTGGTCGGCATCCCGCTGAGCACCAAGCCCGGCCCGCAGAAGCTGGAAGTGCGGGCGGCGACCGGCAACCAC
GAGGAACGCTTCAGCGTCGGCAGCAAGCACTACCGCGAGCAGCGCATCACCCTGAAGAACAAGCGCCAGGTC
AATCCGCTGCCGGAAGACCTCAAGCGCATCGAGCGCGAACTCGCCGAGCAGACCGCCGCCTACCGCCGCTTC
AGTCCCGGCCTGCCCAGCAACCTGATGCTCGACAAGCCGGTCGACGGTCCGCTCTCCAGCCCCTTCGGCCTG
CGCCGCTTCTTCAACGGCGAAGAGCGCAACCCGCATTCCGGTCTAGACTTCGCGGTACCGGCCGGTACGCCG
ATCAAGGCGCCGGCGGCCGGCAAGGTGATCCTCATCGGCGACTACTTCTTCAATGGCAAGACGGTGTTCGTC
GACCATGGCCAGGGCTTCATCAGCATGTTCTGCCACCTGTCGAAGATCGACGTGAAGCTCGGCCAGCAGGTG
CCGCGCGGCGGCGTACTCGGCAAGGTCGGCGCCACCGGCAGGGCCACCGGACCGCACATGCACTGGAACGTC
AGCCTGAACGACGCGCGGGTCGACCCGGCGATCTTCATCGGTGCCTTCCAGCCCTGA
Translation:
MPRTLAFVSTLLLAAFCALPAQADSFIMRLLNKPVPGGVAVVDLGEEGPPPRAFYQGKPVLVVREEGRRWIA
VVGIPLSTKPGPQKLEVRAATGNHEERFSVGSKHYREQRITLKNKRQVNPLPEDLKRIERELAEQTAAYRRF
SPGLPSNLMLDKPVDGPLSSPFGLRRFFNGEERNPHSGLDFAVPAGTPIKAPAAGKVILIGDYFFNGKTVFV
DHGQGFISMFCHLSKIDVKLGQQVPRGGVLGKVGATGRATGPHMHWNVSLNDARVDPAIFIGAFQP*
AnnotationID:2698GeneID:2690
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 18:06:11
Gene Name:
Confidence Code:3
GeneProduct:putative peptidase
Cell Localization:()
Synonyms:PA3787
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0739,pfam01551
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54966.1| (AE016861) peptidase, M23/M37 family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 274

 Score =  429 bits (1102), Expect = e-119
 Identities = 213/278 (76%), Positives = 233/278 (83%), Gaps = 5/278 (1%)

>emb|CAE31896.1| (BX640441) putative peptidase [Bordetella bronchiseptica]
          Length = 286

 Score =  388 bits (996), Expect = e-107
 Identities = 190/274 (69%), Positives = 222/274 (81%), Gaps = 2/274 (0%)






 
Structural Features:
COG0739, NlpD, Membrane proteins related to metalloendopeptidases 
[Cell envelope biogenesis, outer membrane]
CD-Length = 277 residues,  92.8% aligned
Score =  119 bits (297), Expect = 9e-28
Identities = 71/276 (25%), Positives = 102/276 (36%), Gaps = 23/276 (8%)

pfam01551, Peptidase_M37, Peptidase family M23/M37.
CD-Length = 83 residues, 100.0% aligned
Score = 89.5 bits (222), Expect = 8e-19
Identities = 35/83 (42%), Positives = 52/83 (62%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5383




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22528




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31769




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2690_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2690
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4412
                           PA3787_tr
                           translation of PA3787
                           282
                           99.99
                           99.99
                           0
                           1479.0
     

     
     
128416
                           gb|AAG07174.1|AE004797_9
                           (AE004797) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           282
                           99.99
                           99.99
                           0
                           1479.0
     

     
     
128417
                           gb|AAO54966.1|
                           (AE016861) peptidase, M23/M37 family [Pseudomonas syringae pv. tomato str. DC3000]
                           282
                           75.53
                           82.62
                           8
                           1106.0
     

     
     
128418
                           gb|AAN66651.1|AE016293_1
                           (AE016777) peptidase, M23/M37 family [Pseudomonas putida KT2440]
                           285
                           72.98
                           80.35
                           13
                           1028.0
     

     
     
128420
                           emb|CAE36483.1|
                           (BX640426) putative peptidase [Bordetella parapertussis]
                           288
                           67.01
                           78.81
                           6
                           995.0
     

     






      

          
GC ORFID: 45692How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3787Glimmer Score: 

          
Start: 3672331Stop: 3673179

          
Length: 849


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3787 translation of PA3787Homolog Bit Score 574.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4855 (ORF: BLASTX 424.0), t_PA3787 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCGCACCCTAGCCTTCGTTTCCACGCTGTTGCTCGCCGCTTTCTGCGCCCTGCCCGCCCAAGCCGAC 
AGCTTCATCATGCGCCTGCTGAACAAGCCGGTGCCCGGCGGGGTGGCGGTGGTCGACCTCGGCGAGGAAGGC 
CCGCCGCcGcgGGCCTTCTACCAGGGCAAGCCGGTGCTGGTGGTGCGCGAGGAAGGCCGCCGCTGGATCGCC 
GTGGTCGGCATCCCGCTGAGCACCAAGCCCGGCCCGCAGAAGCTGGAAGTGCGGGCGGCGACCGGCAACCAC 
GAGGAACGCTTCAGCGTCGGCAGCAAGCACTACCGCGAGCAGCGCATCACCCTGAAGAACAAGCGCCAGGTC 
AATCCGCTGCCGGAAGACCTCAAGCGCATCGAGCGCGAACTCGCCGAGCAGACCGCCGCCTACCGCCGCTTC 
AGTCCCGGCCTGCCCAGCAACCTGATGCTCGACAAGCCGGTCGACGGTCCGCTCTCCAGCCCCTTCGGCCTG 
CGCCGCTTCTTCAACGGCGAAGAGCGCAACCCGCATTCCGGTCTAGACTTCGCGGTACCGGCCGGTACGCCG 
ATCAAGGCGCCGGCGGCCGGCAAGGTGATCCTCATCGGCGACTACTTCTTCAATGGCAAGACGGTGTTCGTC 
GACCATGGCCAGGGCTTCATCAGCATGTTCTGCCACCTGTCGAAGATCGACGTGAAGCTCGGCCAGCAGGTG 
CCGCGCGGCGGCGTACTCGGCAAGGTCGGCGCCACCGGCAGGGCCACCGGACCGCACATGCACTGGAACGTC 
AGCCTGAACGACGCGCGGGTCGACCCGGCGATCTTCATCGGTGCCTTCCAGCCCTGA