ViewGene
Locus Name:
GeneID:
Location:

GeneID:269
TrivialName: PA14_58690
AnnotatorUID: danlee
Modification Date/Time:2006-05-03 14:02:13
LocusName:PA14_58690
PAO1 Ortholog Locus:PA4523
Sequence Length:2256
Protein Length:751
Start: 5231452
Stop: 5229197
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07911.1|AE004866_5 (AE004866) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 747/751 (99%), Positives = 750/751 (99%)
Sequence:
ATGCAGAACGATGCCAATGTGGTGCACCTGACCAGGGTCGCTTCCGAGCCGTCGCCGAACGCCGGAGCGGGG
CGCCTGCCGGTCATCCTCGTGCAGGTGCGCGACAAGGCGGCGCTGCAGCTGAAACAGGCGTTGCAGGCGTTG
TTCGACAACGCCGACGACACCCTCTTCGAAATGGCCGACCGAGCCACCAGCAACCTCGAACAGAACGCTTTC
TTCGAAGCCATGCGCGACCTGCGCCTCAAGCGCAAGAGTATCGAGCGGGTCTACCTGCAGAAGGTCTTCGAG
GAGTTCTCGGCGCTCAACCAGGTACAGTCCGGCAAATCCGTGCCGACCCTGGATACCGTGTCCTTCGATAGC
CTCAGCCTGGTACAGAACGAGGAACTGGAGGAGTCCGTCGCGGTGGACGCGATGGTGGCGCGGGTGATGAGC
CGCGATGCCTCCGCGCTGGCCCACCTGAGCACCCGCCTGAACACCCTGGTCGGCCGGAAGGTCGACGAGAAG
AGCAATCCCCTCGCTCCGCGTCCGCTGACCTCGGCTTTCCTCGATGCCTGCCAGGGGCTCGGCGTCGAGATC
AAGGTCAAGCTGATCATTCTCAAGCTGTTCGAGAAGTACGTCCTGGCCCATTGCGACCAGTTGTACGCCGAG
GCCAACCAGATCCTGGTCGCTGCGGGCGTGCTGCCGGAACTCAAATCCGCGCTGCCGCGGCGTCAGCCCGCT
GTCCGTCCCGAAGCGGTGCGCGATGCCGGGACCCTGCAGGCACAGGCTGCGCTGCTCGACGGCGGTCAGCAG
GAAGTCTTCGGCGCGCTGCAGGAACTGCTGGCGCAGGTCCGCGACAATCCTTCCTTCTACCGTCGCGAAACG
CCTGAGAATGCCGCGCCGATTTCCAGCAACGACCTGATGCGCCTGCTTTCCCACCTGCAACAGCACTTGCCG
GGCCCTGGCGCCGCGGAGTTCGACGTCCGCGACGGGGTCGACCAACTGCTCCAGCGGGTCAGCCACAAGAGC
GGCCGTTCTCGGGTGGTCGGCCAGGTGGACGATGACGTCATCAACCTGGTGTCGATGCTGTTCGAGTTCATT
CTCGACGACCGCACCCTGCCTGATTCGCTGAAGGCCCTGATCGGTCGGATGCAGATCCCGATGCTCAAGGTG
GCCCTGCTCGACAAGACCTTCTTCAGCCGCGGTAGCCATCCGGCGCGTCGCCTGCTCAACGAGATCGCATCC
GCGTCGCTGGGCTGGGCCGAACACAATGATGCCCGGCGCGACAGCCTGTACCAGAAGATCGAACAGGTCGTG
ATGCGGCTGTTGAACGACTTCGTCGACGACCCGGCGATCTTCGCCGAGTTGCTGGAGGACTTCATTGCCTTC
ACCGGCGACGAGCGCCGCCGCAGCGAGCTCCTCGAGCAACGCACCCGCGACGCCGAGGAAGGCCGCGCCAAG
GCCGAACTGGCTCGTCAGGACGTGGAGCAGGTGCTGAACCAGCGACTGCTCGGCAAGGTCCTGCCGGAGGTG
GTGGTGCGCCTGCTGCGGGATGCCTGGAGCAAGGTGATGCTGCTGATCTGCCTCAAGCATGGCAAGGCTTCG
GCCGAGTGGCGGGAGGCCCTGGATACCATGGACGAGCTGATCTGGAGCGTCGGCCCGCATGATGATCCGCTG
TCCCGCCAACAGTTGCTGGAGCGCGTGCCAGGCCTGCTCAAGGCGCTGCGCGAGGGATTGGCCAGCGCAGCC
TTCGATCCGTTTTCCACCGGAGAATTCTTCAGCCAGCTGGAAACCCTGCATGTCCAGGGCCTGCAGCGCGAC
AAGCGCGGCGAGGCGGCGGTCGCGGACAGCCCGCTGCTCGACGAAGCGACCCCGGGCACGGCCGCGGAAAAG
CCCCGGGCGCCGGTCATGCTGCGGGTGGTCGAGGAAATTGTCCTGACCTCGCCGGACGCCGCCCCGGCGCCT
GTCGAGAGCGAAGTGCGCCTGCCGGACAACGACGAGGCACTGCTGCGGGTCGATGCGCTGCGTGTCGGCAGT
TGGGTGGAAATCCAGGAGGACGCCGAGCACAAGCTGCGCTGCAAGCTGGCGGCAGTGATCCGGCCCACCGGT
CGCTACATCTTCGTCAATCGCACCGGGATGAAGGTCCTGGAAAAGACCCGCATGGGCCTGGCGGTGGAGTTT
CGCCGGCAGGCGGTACGCCTGCTGGACGATGCCTTGCTGTTCGACCGGGCCCTGGAGTCGGTGATCGGCAAC
CTGCGGCGCCTCAAGGGCGCCTAG
Translation:
MQNDANVVHLTRVASEPSPNAGAGRLPVILVQVRDKAALQLKQALQALFDNADDTLFEMADRATSNLEQNAF
FEAMRDLRLKRKSIERVYLQKVFEEFSALNQVQSGKSVPTLDTVSFDSLSLVQNEELEESVAVDAMVARVMS
RDASALAHLSTRLNTLVGRKVDEKSNPLAPRPLTSAFLDACQGLGVEIKVKLIILKLFEKYVLAHCDQLYAE
ANQILVAAGVLPELKSALPRRQPAVRPEAVRDAGTLQAQAALLDGGQQEVFGALQELLAQVRDNPSFYRRET
PENAAPISSNDLMRLLSHLQQHLPGPGAAEFDVRDGVDQLLQRVSHKSGRSRVVGQVDDDVINLVSMLFEFI
LDDRTLPDSLKALIGRMQIPMLKVALLDKTFFSRGSHPARRLLNEIASASLGWAEHNDARRDSLYQKIEQVV
MRLLNDFVDDPAIFAELLEDFIAFTGDERRRSELLEQRTRDAEEGRAKAELARQDVEQVLNQRLLGKVLPEV
VVRLLRDAWSKVMLLICLKHGKASAEWREALDTMDELIWSVGPHDDPLSRQQLLERVPGLLKALREGLASAA
FDPFSTGEFFSQLETLHVQGLQRDKRGEAAVADSPLLDEATPGTAAEKPRAPVMLRVVEEIVLTSPDAAPAP
VESEVRLPDNDEALLRVDALRVGSWVEIQEDAEHKLRCKLAAVIRPTGRYIFVNRTGMKVLEKTRMGLAVEF
RRQAVRLLDDALLFDRALESVIGNLRRLKGA*
AnnotationID:279GeneID:269
AnnotatorUID: danlee
Modification Date/Time: 2006-05-03 14:02:38
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84317149|ref|ZP_00965605.1|  COG0213: Thymidine phosphorylase [Pseudomonas aeruginosa C3719]
Length=751

 Score = 1439 bits (3725),  Expect = 0.0
 Identities = 748/751 (99%), Positives = 751/751 (100%), Gaps = 0/751 (0%)

gi|84322943|ref|ZP_00971020.1|  COG0213: Thymidine phosphorylase [Pseudomonas aeruginosa 2192]
Length=751

 Score = 1439 bits (3724),  Expect = 0.0
 Identities = 747/751 (99%), Positives = 751/751 (100%), Gaps = 0/751 (0%)

gi|9950765|gb|AAG07911.1|  hypothetical protein PA4523 [Pseudomonas aeruginosa PAO1]
 gi|15599719|ref|NP_253213.1|  hypothetical protein PA4523 [Pseudomonas aeruginosa PAO1]
Length=751

 Score = 1435 bits (3715),  Expect = 0.0
 Identities = 747/751 (99%), Positives = 750/751 (99%), Gaps = 0/751 (0%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:541




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17683




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:269
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
448
                           PA4523_tr
                           translation of PA4523
                           751
                           99.46
                           99.86
                           0
                           3715.0
     

     
     
23870
                           gb|AAG07911.1|AE004866_5
                           (AE004866) hypothetical protein PA4523 [Pseudomonas aeruginosa PAO1]
                           751
                           99.46
                           99.86
                           0
                           3715.0
     

     
     
23871
                           gb|AAO54483.1|
                           (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           769
                           64.49
                           76.20
                           36
                           2354.0
     

     
     
23872
                           gb|AAN66413.1|AE016268_12
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           794
                           47.73
                           61.33
                           92
                           1643.0
     

     






      

          
GC ORFID: 43271How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4523Glimmer Score: 

          
Start: 4495131Stop: 4492876

          
Length: 2256


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4523 translation of PA4523Homolog Bit Score 1435.0

          
Other Homologs:  psyr_15may02_Scaffold15_revised_gene2491 (ORF: BLASTX 893.0), t_PA4523 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGAACGATGCCAATGTGGTGCACCTGACCAGGGTCGCTTCCGAGCCGTCGCCGAACGCCGGAGCGGGG 
CGCCTGCCGGTCATCCTCGTGCAGGTGCGCGACAAGGCGGCGCTGCAGCTGAAACAGGCGTTGCAGGCGTTG 
TTCGACAACGCCGACGACACCCTCTTCGAAATGGCCGACCGAGCCACCAGCAACCTCGAACAGAACGCTTTC 
TTCGAAGCCATGCGCGACCTGCGCCTCAAGCGCAAGAGTATCGAGCGGGTCTACCTGCAGAAGGTCTTCGAG 
GAGTTCTCGGCGCTCAACCAGGTACAGTCCGGCAAATCCGTGCCGACCCTGGATACCGTGTCCTTCGATAGC 
CTCAGCCTGGTACAGAACGAGGAACTGGAGGAGTCCGTCGCGGTGGACGCGATGGTGGCGCGGGTGATGAGC 
CGCGATGCCTCCGCGCTGGCCCACCTGAGCACCCGCCTGAACACCCTGGTCGGCCGGAAGGTCGACGAGAAG 
AGCAATCCCCTCGCTCCGCGTCCGCTGACCTCGGCTTTCCTCGATGCCTGCCAGGGGCTCGGCGTCGAGATC 
AAGGTCAAGCTGATCATTCTCAAGCTGTTCGAGAAGTACGTCCTGGCCCATTGCGACCAGTTGTACGCCGAG 
GCCAACCAGATCCTGGTCGCTGCGGGCGTGCTGCCGGAACTCAAATCCGCGCTGCCGCGGCGTCAGCCCGCT 
GTCCGTCCCGAAGCGGTGCGCGATGCCGGGACCCTGCAGGCACAGGCTGCGCTGCTCGACGGCGGTCAGCAG 
GAAGTCTTCGGCGCGCTGCAGGAACTGCTGGCGCAGGTCCGCGACAATCCTTCCTTCTACCGTCGCGAAACG 
CCTGAGAATGCCGCGCCGATTTCCAGCAACGACCTGATGCGCCTGCTTTCCCACCTGCAACAGCACTTGCCG 
GGCCCTGGCGCCGCGGAGTTCGACGTCCGCGACGGGGTCGACCAACTGCTCCAGCGGGTCAGCCACAAGAGC 
GGCCGTTCTCGGGTGGTCGGCCAGGTGGACGATGACGTCATCAACCTGGTGTCGATGCTGTTCGAGTTCATT 
CTCGACGACCGCACCCTGCCTGATTCGCTGAAGGCCCTGATCGGTCGGATGCAGATCCCGATGCTCAAGGTG 
GCCCTGCTCGACAAGACCTTCTTCAGCCGCGGTAGCCATCCGGCGCGTCGCCTGCTCAACGAGATCGCATCC 
GCGTCGCTGGGCTGGGCCGAACACAATGATGCCCGGCGCGACAGCCTGTACCAGAAGATCGAACAGGTCGTG 
ATGCGGCTGTTGAACGACTTCGTCGACGACCCGGCGATCTTCGCCGAGTTGCTGGAGGACTTCATTGCCTTC 
ACCGGCGACGAGCGCCGCCGCAGCGAGCTCCTCGAGCAACGCACCCGCGACGCCGAGGAAGGCCGCGCCAAG 
GCCGAACTGGCTCGTCAGGACGTGGAGCAGGTGCTGAACCAGCGACTGCTCGGCAAGGTCCTGCCGGAGGTG 
GTGGTGCGCCTGCTGCGGGATGCCTGGAGCAAGGTGATGCTGCTGATCTGCCTCAAGCATGGCAAGGCTTCG 
GCCGAGTGGCGGGAGGCCCTGGATACCATGGACGAGCTGATCTGGAGCGTCGGCCCGCATGATGATCCGCTG 
TCCCGCCAACAGTTGCTGGAGCGCGTGCCAGGCCTGCTCAAGGCGCTGCGCGAGGGATTGGCCAGCGCAGCC 
TTCGATCCGTTTTCCACCGGAGAATTCTTCAGCCAGCTGGAAACCCTGCATGTCCAGGGCCTGCAGCGCGAC 
AAGCGCGGCGAGGCGGCGGTCGCGGACAGCCCGCTGCTCGACGAAGCGACCCCGGGCACGGCCGCGGAAAAG 
CCCCGGGCGCCGGTCATGCTGCGGGTGGTCGAGGAAATTGTCCTGACCTCGCCGGACGCCGCCCCGGCGCCT 
GTCGAGAGCGAAGTGCGCCTGCCGGACAACGACGAGGCACTGCTGCGGGTCGATGCGCTGCGTGTCGGCAGT 
TGGGTGGAAATCCAGGAGGACGCCGAGCACAAGCTGCGCTGCAAGCTGGCGGCAGTGATCCGGCCCACCGGT 
CGCTACATCTTCGTCAATCGCACCGGGATGAAGGTCCTGGAAAAGACCCGCATGGGCCTGGCGGTGGAGTTT 
CGCCGGCAGGCGGTACGCCTGCTGGACGATGCCTTGCTGTTCGACCGGGCCCTGGAGTCGGTGATCGGCAAC 
CTGCGGCGCCTCAAGGGCGCCTAG