ViewGene

Locus Name:
GeneID:
Location:

GeneID:2689
TrivialName: PA14_24240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24240
PAO1 Ortholog Locus:PA3086
Sequence Length:861
Protein Length:286
Start: 2103194
Stop: 2104054
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06474.1|AE004733_1 (AE004733) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 284/286 (99%), Positives = 284/286 (99%)
Sequence:
GTGAGCGCGGTGCAGGTCCTGAAGTTTCCCCTGTCGGTCGACCTGGCCGGCTTCGTCGGCCTGCTGCGGCGT
CTGAACGTGCCGCACCGGGTCAGCGAGGAATCCGGCCAGCAGGTCCTCTGGGTGCCCGACGAGCGGCTCGCC
GAGCAGGTCCGCGAGTTGTACCGGCGTTATCCCGAAGGCGATCCGCAGGCGACCCTGGAGGCCGCGCCGCGA
CCGGCGGGGCAGGGGTTCGTCCGGCAACTGCGGATGAGCCCGATGACCGCCGCGGTGTTGCTGCTGACCTTC
GTCGTCGCCGCCGTCACCTACCTTGGCGACAACTTCGCGACGATGCGCTGGCTGACCTTCCAGGACTTCCGT
ATCCAGGGCCAGTACGCGCTGTTCACGCCGTTGGCCGAGAGCCTGGCGGCGGGTCAATGGTGGCGGCTGTTC
ACGCCGATGCTGATCCACTTCGGCTGGCTGCACCTGGCGATGAACGCCATGTGGTTCTGGGAGCTGGGCCGG
CGCATCGAATTCCGCCAGGGCGGCCCGATGCTGCTCGGCCTGACCCTGCTGTTCGGCCTGGCGTCCAACGTG
GTGCAGTACGCGGTGAGCGGCGCCAGCCTGTTCGGCGGGTTGTCCGGGGTGCTCTATGGCCTGCTCGGGCAC
TGCTGGATCTTCCAGTACCTGGCGCCGAACCAGGCCTATCGCCTGCCCAGGGGCGTCGTGGCGATGATGCTG
ATCTGGCTGCTGGTGTGCCTGTCCGGGGTGATCGACCTGCTCGGTTTCGGCTCCATCGCCAACGGCGCGCAC
GTTGGCGGGCTGCTGGTCGGTTGCCTCAGCGGTTTGCTGGGCGGCCTGCTGGCGCGGCGTCGCCGTTGA
Translation:
MSAVQVLKFPLSVDLAGFVGLLRRLNVPHRVSEESGQQVLWVPDERLAEQVRELYRRYPEGDPQATLEAAPR
PAGQGFVRQLRMSPMTAAVLLLTFVVAAVTYLGDNFATMRWLTFQDFRIQGQYALFTPLAESLAAGQWWRLF
TPMLIHFGWLHLAMNAMWFWELGRRIEFRQGGPMLLGLTLLFGLASNVVQYAVSGASLFGGLSGVLYGLLGH
CWIFQYLAPNQAYRLPRGVVAMMLIWLLVCLSGVIDLLGFGSIANGAHVGGLLVGCLSGLLGGLLARRRR*
AnnotationID:2697GeneID:2689
AnnotatorUID: danlee
Modification Date/Time: 2004-02-05 17:05:36
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:14649
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22526
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2689

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4411 PA3086_tr translation of PA3086 286 99.30 99.30 0 1479.0
128411 gb|AAG06474.1|AE004733_1 (AE004733) hypothetical protein PA3086 [Pseudomonas aeruginosa PAO1] 286 98.95 99.30 0 1476.0
128412 gb|AAO57260.1| (AE016869) rhomboid family protein [Pseudomonas syringae pv. tomato str. DC3000] 290 64.82 77.24 10 1019.0
128413 gb|AAN67628.1|AE016392_9 (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440] 298 59.73 73.82 15 939.0
128414 gb|AAN57630.1|AE015899_2 (AE015899) glpG protein [Shewanella oneidensis MR-1] 313 30.67 45.04 60 339.0
GC ORFID: 45691How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3086Glimmer Score:
Start: 2850737Stop: 2849877
Length: 861
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3086 translation of PA3086Homolog Bit Score 574.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene721 (ORF: BLASTX 399.0), t_PA3086 (ORF: GLIMMER)
GC ORF Sequence
GTGAGCGCGGTGCAGGTCCTGAAGTTTCCCCTGTCGGTCGACCTGGCCGGCTTCGTCGGCCTGCTGCGGCGT
CTGAACGTGCCGCACCGGGTCAGCGAGGAATCCGGCCAGCAGGTCCTCTGGGTGCCCGACGAGCGGCTCGCC
GAGCAGGTCCGCGAGTTGTACCGGCGTTATCCCGAAGGCGATCCGCAGGCGACCCTGGAGGCCGCGCCGCGA
CCGGCGGGGCAGGGGTTCGTCCGGCAACTGCGGATGAGCCCGATGACCGCCGCGGTGTTGCTGCTGACCTTC
GTCGTCGCCGCCGTCACCTACCTTGGCGACAACTTCGCGACGATGCGCTGGCTGACCTTCCAGGACTTCCGT
ATCCAGGGCCAGTACGCGCTGTTCACGCCGTTGGCCGAGAGCCTGGCGGCGGGTCAATGGTGGCGGCTGTTC
ACGCCGATGCTGATCCACTTCGGCTGGCTGCACCTGGCGATGAACGCCATGTGGTTCTGGGAGCTGGGCCGG
CGCATCGAATTCCGCCAGGGCGGCCCGATGCTGCTCGGCCTGACCCTGCTGTTCGGCCTGGCGTCCAACGTG
GTGCAGTACGCGGTGAGCGGCGCCAGCCTGTTCGGCGGGTTGTCCGGGGTGCTCTATGGCCTGCTCGGGCAC
TGCTGGATCTTCCAGTACCTGGCGCCGAACCAGGCCTATCGCCTGCCCAGGGGCGTCGTGGCGATGATGCTG
ATCTGGCTGCTGGTGTGCCTGTCCGGGGTGATCGACCTGCTCGGTTTCGGCTCCATCGCCAACGGCGCGCAC
GTTGGCGGGCTGCTGGTCGGTTGCCTCAGCGGTTTGCTGGGCGGCCTGCTGGCGCGGCGTCGCCGTTGA