ViewGene
Locus Name:
GeneID:
Location:

GeneID:2688
TrivialName: PA14_23860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23860
PAO1 Ortholog Locus:PA3112
Sequence Length:873
Protein Length:290
Start: 2074729
Stop: 2075601
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06500.1|AE004735_7 (AE004735) acetyl-CoA carboxylase beta subunit [Pseudomonas aeruginosa PAO1]
Identities = 290/290 (100%), Positives = 290/290 (100%)
Sequence:
ATGAGCAACTGGCTGGTAGACAAGCTGATCCCTTCCATCATGCGTTCCGAGTCCCAGAAGAGTTCGGTACCG
GAAGGCCTGTGGCACAAATGCCCGTCCTGCGAAGCCGTGCTGTACCGTCCGGAGCTGGAAAAGACCCTGGAT
GTCTGCCCGAAGTGCGACCACCACATGCGCATCAACGCGCGTACCCGCCTGGACATCTTCCTCGATGAGGAC
GGTCGCGAGGAGCTGGGTGCCGACCTCGAGCCGGTGGACCGCCTGAAATTCCGCGACAGCAAGAAGTACAAG
GATCGCCTCGCCGCGGCACAGAAGGACACCGGCGAGAAGGACGCGCTGATCGCCATGAGCGGCAAGCTGCAG
GGTATGCCGGTGGTCGCCTGCGCCTTCGAGTTCTCCTTCATGGGCGGTTCGATGGGCGCCATCGTCGGCGAG
CGCTTCGTTCGCGCGGCCAACGTCGCCCTGGAGAAGCGCTGCCCGCTGATCTGCTTCTCCGCCTCCGGCGGC
GCGCGCATGCAGGAAGCGCTGATCTCGCTGATGCAGATGGCCAAGACTTCGGCGGTCCTGGCGCGCCTGCGC
GAAGAAGGCATCCCGTTCGTCTCGGTATTGACCGACCCGGTCTACGGCGGCGTTTCCGCCAGCCTGGCGATG
CTCGGCGACGTGATCGTCGGCGAACCCAAGGCGCTGATCGGCTTCGCCGGTCCCCGCGTGATCGAGCAGACC
GTCCGCGAGAAGCTGCCGGAAGGCTTCCAGCGTAGCGAGTTCCTCCTCGAGCATGGCGCCATCGACATGATC
GTGCATCGTGCCGAGTTGCGGCCGCGCCTGGCCAATCTGCTGTCGGCCTTCACTCATTCGCCGAGCCCCGTA
TCCGCATGA
Translation:
MSNWLVDKLIPSIMRSESQKSSVPEGLWHKCPSCEAVLYRPELEKTLDVCPKCDHHMRINARTRLDIFLDED
GREELGADLEPVDRLKFRDSKKYKDRLAAAQKDTGEKDALIAMSGKLQGMPVVACAFEFSFMGGSMGAIVGE
RFVRAANVALEKRCPLICFSASGGARMQEALISLMQMAKTSAVLARLREEGIPFVSVLTDPVYGGVSASLAM
LGDVIVGEPKALIGFAGPRVIEQTVREKLPEGFQRSEFLLEHGAIDMIVHRAELRPRLANLLSAFTHSPSPV
SA*
AnnotationID:2696GeneID:2688
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 07:07:14
Gene Name:accD
Confidence Code:2
GeneProduct: acetyl-CoA carboxylase beta subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0777
Secondary Functional Category(ies):
EC Number:6.4.1.2
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67610.1|AE016391_1 (AE016781) acetyl-CoA carboxylase, carboxyl transferase, beta
           subunit [Pseudomonas putida KT2440]
          Length = 297

 Score =  508 bits (1307), Expect = e-143
 Identities = 253/290 (87%), Positives = 266/290 (91%)

>gb|AAO10391.1|AE016803_178 (AE016803) Acetyl-CoA carboxylase beta subunit [Vibrio vulnificus
           CMCP6]
          Length = 310

 Score =  403 bits (1036), Expect = e-112
 Identities = 196/286 (68%), Positives = 236/286 (82%), Gaps = 1/286 (0%)

>gb|AAC75376.1| (AE000320) acetylCoA carboxylase, carboxytransferase component,
           beta subunit [Escherichia coli K12]
          Length = 304

 Score =  394 bits (1011), Expect = e-109
 Identities = 193/270 (71%), Positives = 226/270 (83%)








 
Structural Features:
COG0777, AccD, Acetyl-CoA carboxylase beta subunit 
[Lipid metabolism]
CD-Length = 294 residues,  98.3% aligned
Score =  439 bits (1130), Expect = 2e-124
Identities = 181/289 (62%), Positives = 215/289 (74%), Gaps = 1/289 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5379




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22524




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32413




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2688_cdd.html


    		




 
URL:

















    ReferenceID:33598




  
Author/Investigator(s):
        Kiatpapan P, Kobayashi H, Sakaguchi M, Ono H, Yamashita M, Kaneko Y, Murooka Y.





  
Title:
        Molecular characterization of Lactobacillus plantarum genes for beta-ketoacyl-acyl carrier protein synthase III (fabH) and acetyl coenzyme A carboxylase (accBCDA), which are essential for fatty acid biosynthesis.




  
PubMed:
        11133475


MedLine:
        




    
Source:
Appl Environ Microbiol. 2001 Jan;67(1):426-33.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11133475

















    ReferenceID:33599




  
Author/Investigator(s):
        Best EA, Knauf VC.





  
Title:
        Organization and nucleotide sequences of the genes encoding the biotin carboxyl carrier protein and biotin carboxylase protein of Pseudomonas aeruginosa acetyl coenzyme A carboxylase.




  
PubMed:
        7693652


MedLine:
        




    
Source:
J Bacteriol. 1993 Nov;175(21):6881-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7693652









           
Homologs By Global Alignment 

           

       



     
Gene ID:2688
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4410
                           PA3112_tr
                           translation of PA3112
                           290
                           99.99
                           99.99
                           0
                           1480.0
     

     
     
128293
                           gb|AAG06500.1|AE004735_7
                           (AE004735) acetyl-CoA carboxylase beta subunit [Pseudomonas aeruginosa PAO1]
                           290
                           99.99
                           99.99
                           0
                           1480.0
     

     
     
128294
                           dbj|BAB13795.1|
                           (AB031231) acetyl-CoA carboxyltransferase beta-subunit [Pseudomonas aeruginosa]
                           290
                           99.99
                           99.99
                           0
                           1480.0
     

     
     
128295
                           gb|AAN67610.1|AE016391_1
                           (AE016781) acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Pseudomonas putida KT2440]
                           297
                           85.18
                           89.56
                           7
                           1307.0
     

     
     
128296
                           gb|AAO57284.1|
                           (AE016869) acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           306
                           82.35
                           87.25
                           16
                           1297.0
     

     






      

          
GC ORFID: 45690How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3112Glimmer Score: 

          
Start: 2879202Stop: 2878330

          
Length: 873


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3112 translation of PA3112Homolog Bit Score 574.0

          
Other Homologs:  t_PA3112 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAACTGGCTGGTAGACAAGCTGATCCCTTCCATCATGCGTTCCGAGTCCCAGAAGAGTTCGGTACCG 
GAAGGCCTGTGGCACAAATGCCCGTCCTGCGAAGCCGTGCTGTACCGTCCGGAGCTGGAAAAGACCCTGGAT 
GTCTGCCCGAAGTGCGACCACCACATGCGCATCAACGCGCGTACCCGCCTGGACATCTTCCTCGATGAGGAC 
GGTCGCGAGGAGCTGGGTGCCGACCTCGAGCCGGTGGACCGCCTGAAATTCCGCGACAGCAAGAAGTACAAG 
GATCGCCTCGCCGCGGCACAGAAGGACACCGGCGAGAAGGACGCGCTGATCGCCATGAGCGGCAAGCTGCAG 
GGTATGCCGGTGGTCGCCTGCGCCTTCGAGTTCTCCTTCATGGGCGGTTCGATGGGCGCCATCGTCGGCGAG 
CGCTTCGTTCGCGCGGCCAACGTCGCCCTGGAGAAGCGCTGCCCGCTGATCTGCTTCTCCGCCTCCGGCGGC 
GCGCGCATGCAGGAAGCGCTGATCTCGCTGATGCAGATGGCCAAGACTTCGGCGGTCCTGGCGCGCCTGCGC 
GAAGAAGGCATCCCGTTCGTCTCGGTATTGACCGACCCGGTCTACGGCGGCGTTTCCGCCAGCCTGGCGATG 
CTCGGCGACGTGATCGTCGGCGAACCCAAGGCGCTGATCGGCTTCGCCGGTCCCCGCGTGATCGAGCAGACC 
GTCCGCGAGAAGCTGCCGGAAGGCTTCCAGCGTAGCGAGTTCCTCCTCGAGCATGGCGCCATCGACATGATC 
GTGCATCGTGCCGAGTTGCGGCCGCGCCTGGCCAATCTGCTGTCGGCCTTCACTCATTCGCCGAGCCCCGTA 
TCCGCATGA