ViewGene

Locus Name:
GeneID:
Location:

GeneID:2687
TrivialName: PA14_52910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52910
PAO1 Ortholog Locus:PA0878
Sequence Length:828
Protein Length:275
Start: 4691094
Stop: 4690267
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04267.1|AE004522_9 (AE004522) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 274/275 (99%), Positives = 274/275 (99%)
Sequence:
ATGAGTGAGTCCGCTTTCGCCCCCTGGATCGGTCGCCAGGAAGAAACCCACGATCAATTGAGCCGCAACCTG
GTCAAGCGCATCGCCGCCACCTTCGGCGAGCTGACCCCGGCCCACGGCGAAGCGCTGCCGCCGCTCTGGCAC
TGGGCGTTCTTCCAGGACCCGGTGGAGGCCGCCGGCCTCGGCGTCGACGGCCACCCGGCGCGCGGCGGTTTC
CTGCCGCCGGCGGACGATCGCAACCGCATGTGGGCCGGCGGGCGCCTGGAGTTCCACCAGCCGCTGCGGGTC
GGCGGCGAGGCCAGCCGCACCTCGACCATCCTCCGGGTCGAGGAGAAGCACGGTCGCAGCGGCGCGCTGCTG
TTCGTCACCCTGCGCCACGACTACCGCCAGGACGGCCAACTGGCGCTGAGCGAAGAGCACGACATCGTCTAC
CGCGAACCGACCCCGCCCAAGCTCGGCGGTACCGAGGCCTTGCCCGAGGGCGACTGGCGCGAGGCGCTGGAG
CCCGATCCGGTGTTGCTGTTCCGCTACTCGGCGGTGACTTTCAACGGCCACCGCATTCACTACGACTGGCCC
TATGTCACCGACGCCGAAGGCTATCCGGGCCTGGTGGTGCACGGTCCGCTGATCGCCACCCTGGCCCTGCGC
GCGTTCTGCCGGGCCAATCCGCAGGCGCGCCTGCGTCGCTTCGCCTATCGCGGCCTGCGCCCGCTGATCTGT
CCCGAGCCGTTCGAGGTCGGCGGCCGCCTGCTCGCTGCCGGCAAGGCCGAGGTATGGGTCGGCAATGGCGCC
GGCCTGGCCCAGCGTGGCGACGTGGAATTCGACTGA
Translation:
MSESAFAPWIGRQEETHDQLSRNLVKRIAATFGELTPAHGEALPPLWHWAFFQDPVEAAGLGVDGHPARGGF
LPPADDRNRMWAGGRLEFHQPLRVGGEASRTSTILRVEEKHGRSGALLFVTLRHDYRQDGQLALSEEHDIVY
REPTPPKLGGTEALPEGDWREALEPDPVLLFRYSAVTFNGHRIHYDWPYVTDAEGYPGLVVHGPLIATLALR
AFCRANPQARLRRFAYRGLRPLICPEPFEVGGRLLAAGKAEVWVGNGAGLAQRGDVEFD*
AnnotationID:2695GeneID:2687
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 13:01:14
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0878
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3777
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG3777, Uncharacterized conserved protein [Function unknown]
        CD-Length = 273 residues, 100.0% aligned
        Score =  372 bits (957), Expect = 4e-104
Genomic Context:
Comment:
ReferenceID:5377
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22522
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2687

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4409 PA0878_tr translation of PA0878 275 99.63 99.63 0 1480.0
128283 gb|AAG04267.1|AE004522_9 (AE004522) hypothetical protein PA0878 [Pseudomonas aeruginosa PAO1] 275 99.63 99.63 0 1480.0
128284 emb|CAE34443.1| (BX640449) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 276 61.95 72.46 1 921.0
128285 emb|CAE38929.1| (BX640434) conserved hypothetical protein [Bordetella parapertussis] 276 61.95 72.46 1 921.0
128287 emb|CAE36201.1| (BX640424) conserved hypothetical protein [Bordetella parapertussis] 289 43.59 56.40 21 602.0
GC ORFID: 45689How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0878Glimmer Score:
Start: 262813Stop: 263640
Length: 828
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0878 translation of PA0878Homolog Bit Score 574.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene296 (ORF: BLASTX 407.0), t_PA0878 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTGAGTCCGCTTTCGCCCCCTGGATCGGTCGCCAGGAAGAAACCCACGATCAATTGAGCCGCAACCTG
GTCAAGCGCATCGCCGCCACCTTCGGCGAGCTGACCCCGGCCCACGGCGAAGCGCTGCCGCCGCTCTGGCAC
TGGGCGTTCTTCCAGGACCCGGTGGAGGCCGCCGGCCTCGGCGTCGACGGCCACCCGGCGCGCGGCGGTTTC
CTGCCGCCGGCGGACGATCGCAACCGCATGTGGGCCGGCGGGCGCCTGGAGTTCCACCAGCCGCTGCGGGTC
GGCGGCGAGGCCAGCCGCACCTCGACCATCCTCCGGGTCGAGGAGAAGCACGGTCGCAGCGGCGCGCTGCTG
TTCGTCACCCTGCGCCACGACTACCGCCAGGACGGCCAACTGGCGCTGAGCGAAGAGCACGACATCGTCTAC
CGCGAACCGACCCCGCCCAAGCTCGGCGGTACCGAGGCCTTGCCCGAGGGCGACTGGCGCGAGGCGCTGGAG
CCCGATCCGGTGTTGCTGTTCCGCTACTCGGCGGTGACTTTCAACGGCCACCGCATTCACTACGACTGGCCC
TATGTCACCGACGCCGAAGGCTATCCGGGCCTGGTGGTGCACGGTCCGCTGATCGCCACCCTGGCCCTGCGC
GCGTTCTGCCGGGCCAATCCGCAGGCGCGCCTGCGTCGCTTCGCCTATCGCGGCCTGCGCCCGCTGATCTGT
CCCGAGCCGTTCGAGGTCGGCGGCCGCCTGCTCGCTGCCGGCAAGGCCGAGGTATGGGTCGGCAATGGCGCC
GGCCTGGCCCAGCGTGGCGACGTGGAATTCGACTGA