ViewGene
Locus Name:
GeneID:
Location:

GeneID:2686
TrivialName: PA14_02760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02760
PAO1 Ortholog Locus:PA0226
Sequence Length:852
Protein Length:283
Start: 245632
Stop: 246483
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03615.1|AE004460_8 (AE004460) probable CoA transferase, subunit A [Pseudomonas aeruginosa PAO1]
Identities = 282/283 (99%), Positives = 282/283 (99%)
Sequence:
ATGGCTGAAATCCTCTCCCTGCGCGAAGCGGTGCGACGCTTCGTCCACGATGGCGACAGCGTCGCCCTCGAA
GGCTTCACTCACCTGATCCCGACGGCCGCCGGCCACGAGTTGATCCGCCAGGGCAGGAAAGACCTGACGCTG
ATCCGCATGACTCCCGACCTGGTCTACGACCTGCTGATCGGTGCAGGCTGCGCGAAGAAGCTGGTGTTCTCC
TGGGGCGGCAACCCCGGTGTCGGTTCGCTGCACCGCCTGCGCGACGCGGTGGAGAAGGGCTGGCCGCACCCG
CTGGAGATCGAGGAACACAGCCACGCCGACCTCGCCAACGCCTATGTCGCCGGCGCCTCCGGGCTGCCCTTC
GCGGTGCTGCGCGCCTACGCCGGCTCCGACCTGCCGAAGGTCAACCCGCTGATCCGCAGCGTCACCTGCCCG
TTCACCGGCGAAGTGCTGGCGGCGGTGCCCTCGGTGCGCCCGGACGTCAGCGTGATCCACGCGCAGAAGGCC
GACCGCAAGGGCAACGTGCTGCTCTGGGGCATCCTCGGCGTGCAGAAGGAAGCGGCCCTGGCGGCGAAGCGC
TGCATCGTCACCGTCGAGGAGATCGTCGACGAACTGGACGCCCCGATGAACGCCTGCGTCCTGCCGAGCTGG
GCGCTCAGCGCCGTGTGCCTGGTGCCCGGCGGCGCGCATCCGTCCTATGCCCACGGCTACTACGAACGCGAC
AACCGCTTCTACCAGGACTGGGACCCGATCGCCCGCGACCGCGAAAGCTTTACCGCGTGGATCGACGAATAC
ATCCGGGGGACCGAGGATTTCGGCGCCTTCCAGGCCAAGCTCGCGGAGGGCAAGCGATGA
Translation:
MAEILSLREAVRRFVHDGDSVALEGFTHLIPTAAGHELIRQGRKDLTLIRMTPDLVYDLLIGAGCAKKLVFS
WGGNPGVGSLHRLRDAVEKGWPHPLEIEEHSHADLANAYVAGASGLPFAVLRAYAGSDLPKVNPLIRSVTCP
FTGEVLAAVPSVRPDVSVIHAQKADRKGNVLLWGILGVQKEAALAAKRCIVTVEEIVDELDAPMNACVLPSW
ALSAVCLVPGGAHPSYAHGYYERDNRFYQDWDPIARDRESFTAWIDEYIRGTEDFGAFQAKLAEGKR*
AnnotationID:2694GeneID:2686
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 13:01:08
Gene Name:
Confidence Code:3
GeneProduct:putative CoA transferase, subunit A
Cell Localization:()
Synonyms:catI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:putative 3-oxoadipate:succinyl-CoA transferase subunit A"
Functional Category Confidence Code:5
COGs:COG1788
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57760.1| (AE016871) 3-oxoadipate:succinyl-CoA transferase, subunit A
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 285

 Score =  516 bits (1329), Expect = e-146
 Identities = 245/279 (87%), Positives = 267/279 (95%)

>gb|AAM35256.1| (AE011662) glutaconate CoA transferase subunit A [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 287

 Score =  422 bits (1086), Expect = e-118
 Identities = 200/283 (70%), Positives = 232/283 (81%)

>emb|CAC49899.1| (AL603647) putative CoA-transferase subunit A protein
           [Sinorhizobium meliloti]
          Length = 286

 Score =  399 bits (1024), Expect = e-110
 Identities = 200/282 (70%), Positives = 224/282 (79%), Gaps = 3/282 (1%)






 
Structural Features:
COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit 
[Lipid metabolism]
CD-Length = 220 residues, 100.0% aligned
Score =  226 bits (578), Expect = 2e-60
Identities = 92/233 (39%), Positives = 111/233 (47%), Gaps = 18/233 (7%)









   
Genomic Context:






   
Comment:
other possible gene name: gctA

other possible gene product: 
glutaconate CoA transferase subunit A


















    ReferenceID:5375




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22520




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33585




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2686_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2686
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4408
                           PA0226_tr
                           translation of PA0226
                           283
                           99.64
                           99.64
                           0
                           1482.0
     

     
     
128275
                           gb|AAG03615.1|AE004460_8
                           (AE004460) probable CoA transferase, subunit A [Pseudomonas aeruginosa PAO1]
                           283
                           99.64
                           99.64
                           0
                           1482.0
     

     
     
128276
                           gb|AAL02405.1|
                           (AY044272) 3-oxoadipate:succinyl-CoA transferase subunit A [Pseudomonas sp. B13]
                           283
                           87.27
                           95.05
                           1
                           1335.0
     

     
     
128277
                           gb|AAO57760.1|
                           (AE016871) 3-oxoadipate:succinyl-CoA transferase, subunit A [Pseudomonas syringae pv. tomato str. DC3000]
                           285
                           85.96
                           93.68
                           2
                           1329.0
     

     
     
128279
                           gb|AAM39683.1|
                           (AE012133) glutaconate CoA transferase subunit A [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           287
                           70.38
                           80.83
                           4
                           1084.0
     

     






      

          
GC ORFID: 45688How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0226Glimmer Score: 

          
Start: 6046973Stop: 6047824

          
Length: 852


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0226 translation of PA0226Homolog Bit Score 575.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6191 (ORF: BLASTX 514.0), t_PA0226 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGAAATCCTCTCCCTGCGCGAAGCGGTGCGACGCTTCGTCCACGATGGCGACAGCGTCGCCCTCGAA 
GGCTTCACTCACCTGATCCCGACGGCCGCCGGCCACGAGTTGATCCGCCAGGGCAGGAAAGACCTGACGCTG 
ATCCGCATGACTCCCGACCTGGTCTACGACCTGCTGATCGGTGCAGGCTGCGCGAAGAAGCTGGTGTTCTCC 
TGGGGCGGCAACCCCGGTGTCGGTTCGCTGCACCGCCTGCGCGACGCGGTGGAGAAGGGCTGGCCGCACCCG 
CTGGAGATCGAGGAACACAGCCACGCCGACCTCGCCAACGCCTATGTCGCCGGCGCCTCCGGGCTGCCCTTC 
GCGGTGCTGCGCGCCTACGCCGGCTCCGACCTGCCGAAGGTCAACCCGCTGATCCGCAGCGTCACCTGCCCG 
TTCACCGGCGAAGTGCTGGCGGCGGTGCCCTCGGTGCGCCCGGACGTCAGCGTGATCCACGCGCAGAAGGCC 
GACCGCAAGGGCAACGTGCTGCTCTGGGGCATCCTCGGCGTGCAGAAGGAAGCGGCCCTGGCGGCGAAGCGC 
TGCATCGTCACCGTCGAGGAGATCGTCGACGAACTGGACGCCCCGATGAACGCCTGCGTCCTGCCGAGCTGG 
GCGCTCAGCGCCGTGTGCCTGGTGCCCGGCGGCGCGCATCCGTCCTATGCCCACGGCTACTACGAACGCGAC 
AACCGCTTCTACCAGGACTGGGACCCGATCGCCCGCGACCGCGAAAGCTTTACCGCGTGGATCGACGAATAC 
ATCCGGGGGACCGAGGATTTCGGCGCCTTCCAGGCCAAGCTCGCGGAGGGCAAGCGATGA