ViewGene
Locus Name:
GeneID:
Location:

GeneID:2684
TrivialName: PA14_66490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66490
PAO1 Ortholog Locus:PA5029
Sequence Length:906
Protein Length:301
Start: 5931581
Stop: 5930676
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08414.1|AE004916_3 (AE004916) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 301/301 (100%), Positives = 301/301 (100%)
Sequence:
TTGGAACTCAGGCACCTGCGCTATTTCATCGCCGTCGCCGAGGAGCTGCACTTCGGCCGCGCCGCCGAGCGC
CTGGGGATCTCCCAGCCGCCGTTGAGCCAGCAGATCCAGGCGCTGGAGGAGGAAATCGGTGCGCGCCTGTTC
GAGCGCACCAACCGCCGCGTCGAACTCACCGACGCCGGCCGGCTGTTCCTCGACGAGTCCCGCCAGGTGCTG
GCCCAGGTAGACAAGGCGGTGCTGCTGGCGCGTCGCGCCCACCTGGGGGAACTGGGCGAGCTGAAGATCGGT
TTCACTTCCTCGGCACCCTTCACCTCGACCATACCCAGCAGCATCCATGCCTTCCGCAAGGCCTATCCGGAC
GTACACCTCGACCTGCAGGAAATGAGCAGCCGCCAGGTACTCAAGGCGCTGCTCGAGGAAAGCCTGCAGGTG
GGCGTGATCCGCCCGCTGGCGCTGCCGGATGCGGTGCATTGGGTGGAGTTGTTCCGCGAACCGCTGGTGGCG
GTGCTGCGGGCCGACCATCCGCTGGCGGCCGGCAGCGAGGATGGCCTGGCCATCGCCGCCCTGGCCGAGGAG
CCCTTCGTGTTCTTCCCGCGCAGCTACGGCACCGGGCTCTACGACCAGGTCATCGCCCTGACCCGACAGGCC
GGCTTCAGCCCGCGCATCGCCCAGGAGGCCAGCGAGGCGATGACCATCATCGGCCTGGTCTCGGCCGGACTG
GGGGTGTCGATCCTGCCGGCGTCGTTCCGCCGCACCCGGGTCGACGGCGTGGTCTACCGCACCCTGAGCGAT
CCCGAGGCGACGACTGCGGTATGGCTGGTCCGCCGGCAGAACGAGGGCTCGCCGCTGGCGCTGTCCTTCATC
GACCTGGTGACCCGCGAGGCGGCCAGCCTGCGCCGGCGCTGA
Translation:
MELRHLRYFIAVAEELHFGRAAERLGISQPPLSQQIQALEEEIGARLFERTNRRVELTDAGRLFLDESRQVL
AQVDKAVLLARRAHLGELGELKIGFTSSAPFTSTIPSSIHAFRKAYPDVHLDLQEMSSRQVLKALLEESLQV
GVIRPLALPDAVHWVELFREPLVAVLRADHPLAAGSEDGLAIAALAEEPFVFFPRSYGTGLYDQVIALTRQA
GFSPRIAQEASEAMTIIGLVSAGLGVSILPASFRRTRVDGVVYRTLSDPEATTAVWLVRRQNEGSPLALSFI
DLVTREAASLRRR*
AnnotationID:2692GeneID:2684
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 14:02:08
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:ynfL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues, 100.0% aligned
Score =  142 bits (357), Expect = 7e-35
Identities = 114/305 (37%), Positives = 163/305 (53%), Gaps = 12/305 (3%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues,  99.0% aligned
Score =  117 bits (295), Expect = 1e-27
Identities = 72/212 (33%), Positives = 104/212 (49%), Gaps = 8/212 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14647




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22516




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34944




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2684_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2684
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4404
                           PA5029_tr
                           translation of PA5029
                           301
                           99.66
                           99.99
                           0
                           1482.0
     

     
     
128195
                           gb|AAG08414.1|AE004916_3
                           (AE004916) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           301
                           99.66
                           99.99
                           0
                           1483.0
     

     
     
128196
                           gb|AAO58538.1|
                           (AE016874) transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000]
                           301
                           69.10
                           85.04
                           4
                           1072.0
     

     
     
128197
                           gb|AAN70636.1|AE016707_6
                           (AE016793) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           301
                           68.77
                           84.71
                           2
                           1062.0
     

     
     
128203
                           gb|AAN43200.1|AE015183_1
                           (AE015183) putative transcriptional regulator LYSR-type [Shigella flexneri 2a str. 301]
                           306
                           53.26
                           70.26
                           11
                           772.0
     

     






      

          
GC ORFID: 45686How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5029Glimmer Score: 

          
Start: 5195264Stop: 5194359

          
Length: 906


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5029 translation of PA5029Homolog Bit Score 575.0

          
Other Homologs:  t_PA2510 (ORF: BLASTX 185.0), t_PA5029 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGGAACTCAGGCACCTGCGCTATTTCATCGCCGTCGCCGAGGAGCTGCACTTCGGCCGCGCCGCCGAGCGC 
CTGGGGATCTCCCAGCCGCCGTTGAGCCAGCAGATCCAGGCGCTGGAGGAGGAAATCGGTGCGCGCCTGTTC 
GAGCGCACCAACCGCCGCGTCGAACTCACCGACGCCGGCCGGCTGTTCCTCGACGAGTCCCGCCAGGTGCTG 
GCCCAGGTAGACAAGGCGGTGCTGCTGGCGCGTCGCGCCCACCTGGGGGAACTGGGCGAGCTGAAGATCGGT 
TTCACTTCCTCGGCACCCTTCACCTCGACCATACCCAGCAGCATCCATGCCTTCCGCAAGGCCTATCCGGAC 
GTACACCTCGACCTGCAGGAAATGAGCAGCCGCCAGGTACTCAAGGCGCTGCTCGAGGAAAGCCTGCAGGTG 
GGCGTGATCCGCCCGCTGGCGCTGCCGGATGCGGTGCATTGGGTGGAGTTGTTCCGCGAACCGCTGGTGGCG 
GTGCTGCGGGCCGACCATCCGCTGGCGGCCGGCAGCGAGGATGGCCTGGCCATCGCCGCCCTGGCCGAGGAG 
CCCTTCGTGTTCTTCCCGCGCAGCTACGGCACCGGGCTCTACGACCAGGTCATCGCCCTGACCCGACAGGCC 
GGCTTCAGCCCGCGCATCGCCCAGGAGGCCAGCGAGGCGATGACCATCATCGGCCTGGTCTCGGCCGGACTG 
GGGGTGTCGATCCTGCCGGCGTCGTTCCGCCGCACCCGGGTCGACGGCGTGGTCTACCGCACCCTGAGCGAT 
CCCGAGGCGACGACTGCGGTATGGCTGGTCCGCCGGCAGAACGAGGGCTCGCCGCTGGCGCTGTCCTTCATC 
GACCTGGTGACCCGCGAGGCGGCCAGCCTGCGCCGGCGCTGA