ViewGene
Locus Name:
GeneID:
Location:

GeneID:2683
TrivialName: PA14_63190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63190
PAO1 Ortholog Locus:PA4779
Sequence Length:894
Protein Length:297
Start: 5640004
Stop: 5639111
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08165.1|AE004891_7 (AE004891) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 294/297 (98%), Positives = 296/297 (99%)
Sequence:
ATGCCTGTTGCACATATCCTGCTCGCCCTGCTGGTGACCCTGATCTGGGGTCTGAACTTCGTCGTTATCAAG
GTCGGCCTCGGCGACTTCCCGCCGCTACTGTTCTGCGCCCTGCGCTTCGCCCTGGCGGCGCTGCCGCTGCTG
GTCCTGCGCGGGCCGATGCCGGCGCCGTTCGGACGCATCCTGCTGATCGGCGTGCTCCTCGGAGTGGTCAAG
TTCGGCCTGCTGTTCGTCGGCATGGCCCAGGGCATGCCGGCCGGGCTGTCGTCGCTGGTGCTGCAGAGCCAG
GTATTCTTCACCATCCTCATCGCCGCCCTGTGGCTGGGCGAGCGGCCGTCGCCGCGCGGGTTGTTCGGCCTC
CTGCTGGCGGCGGCGGGGCTGGTCCTGATCGGCCTGGAGCGGCCGCTGGGAGACAGCCTGCTGGCATTCCTG
CTGGTGGTCGCCGCGGCGCTGGCCTGGTCCTTCGCCAACATCGCCACCAAGCGTTCCGGGGCCACCGACATG
CTGCGCCTGATCTGCTGGGTCAGCCTGGTCCCGCCTTTGCCGCTGCTGGCGCTTTCCTATCTATTCGAAGGT
CCGCACGCCATCGAGCGCGCAGTGCTGAACATGAGCTGGGGCGGCTTCGGCGCGCTGCTCTACATCGCCTTC
GGCGCGACCACGGTGGGCTTCGCCATCTGGAGTTTCCTCCTGCGCCACTACCCGGCCAGCCTGGTGACGCCG
TTCGCCCTGGCGGTGCCGGTGTCGGGCATGCTCGCCGGCTGGCTGCTGCTCGGCGAACGCCTCGACCTGGAC
AGCCTGCTGGCCTGCGCGCTGGTGTTCGTCGGGCTGGCCATCACCCTGTTGCCGGCCAGCCTGCTGCGACGC
TTCGCCTGGCCGGTGCGGCGGGTGGGATGA
Translation:
MPVAHILLALLVTLIWGLNFVVIKVGLGDFPPLLFCALRFALAALPLLVLRGPMPAPFGRILLIGVLLGVVK
FGLLFVGMAQGMPAGLSSLVLQSQVFFTILIAALWLGERPSPRGLFGLLLAAAGLVLIGLERPLGDSLLAFL
LVVAAALAWSFANIATKRSGATDMLRLICWVSLVPPLPLLALSYLFEGPHAIERAVLNMSWGGFGALLYIAF
GATTVGFAIWSFLLRHYPASLVTPFALAVPVSGMLAGWLLLGERLDLDSLLACALVFVGLAITLLPASLLRR
FAWPVRRVG*
AnnotationID:2691GeneID:2683
AnnotatorUID: diggins
Modification Date/Time: 2005-03-10 07:07:53
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA4779
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAB66295.1| (AL939113) integral membrane protein. [Streptomyces coelicolor
           A3(2)]
          Length = 311

 Score =  255 bits (651), Expect = 2e-67
 Identities = 140/283 (49%), Positives = 182/283 (64%)

>gb|AAN68480.1|AE016480_7 (AE016784) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 326

 Score =  242 bits (618), Expect = 2e-63
 Identities = 130/288 (45%), Positives = 176/288 (61%)

>gb|AAL42859.1| (AE009140) permease [Agrobacterium tumefaciens str. C58 (U.
           Washington)]
          Length = 297

 Score =  240 bits (613), Expect = 6e-63
 Identities = 117/280 (41%), Positives = 177/280 (63%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5369




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22514




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37686




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2683_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2683
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4403
                           PA4779_tr
                           translation of PA4779
                           297
                           98.98
                           99.66
                           0
                           1481.0
     

     
     
128179
                           gb|AAG08165.1|AE004891_7
                           (AE004891) hypothetical protein PA4779 [Pseudomonas aeruginosa PAO1]
                           297
                           98.98
                           99.66
                           0
                           1481.0
     

     
     
128181
                           dbj|BAC73016.1|
                           (AP005042) hypothetical protein [Streptomyces avermitilis MA-4680]
                           308
                           46.42
                           59.74
                           13
                           632.0
     

     
     
128180
                           emb|CAB66295.1|
                           (AL939113) integral membrane protein. [Streptomyces coelicolor A3(2)]
                           320
                           44.68
                           57.81
                           32
                           648.0
     

     
     
128186
                           emb|CAE42306.1|
                           (BX640417) putative integral membrane protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           307
                           44.62
                           59.60
                           17
                           559.0
     

     






      

          
GC ORFID: 45685How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4779Glimmer Score: 

          
Start: 4903684Stop: 4902791

          
Length: 894


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4779 translation of PA4779Homolog Bit Score 575.0

          
Other Homologs:  t_PA4779 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGTTGCACATATCCTGCTCGCCCTGCTGGTGACCCTGATCTGGGGTCTGAACTTCGTCGTTATCAAG 
GTCGGCCTCGGCGACTTCCCGCCGCTACTGTTCTGCGCCCTGCGCTTCGCCCTGGCGGCGCTGCCGCTGCTG 
GTCCTGCGCGGGCCGATGCCGGCGCCGTTCGGACGCATCCTGCTGATCGGCGTGCTCCTCGGAGTGGTCAAG 
TTCGGCCTGCTGTTCGTCGGCATGGCCCAGGGCATGCCGGCCGGGCTGTCGTCGCTGGTGCTGCAGAGCCAG 
GTATTCTTCACCATCCTCATCGCCGCCCTGTGGCTGGGCGAGCGGCCGTCGCCGCGCGGGTTGTTCGGCCTC 
CTGCTGGCGGCGGCGGGGCTGGTCCTGATCGGCCTGGAGCGGCCGCTGGGAGACAGCCTGCTGGCATTCCTG 
CTGGTGGTCGCCGCGGCGCTGGCCTGGTCCTTCGCCAACATCGCCACCAAGCGTTCCGGGGCCACCGACATG 
CTGCGCCTGATCTGCTGGGTCAGCCTGGTCCCGCCTTTGCCGCTGCTGGCGCTTTCCTATCTATTCGAAGGT 
CCGCACGCCATCGAGCGCGCAGTGCTGAACATGAGCTGGGGCGGCTTCGGCGCGCTGCTCTACATCGCCTTC 
GGCGCGACCACGGTGGGCTTCGCCATCTGGAGTTTCCTCCTGCGCCACTACCCGGCCAGCCTGGTGACGCCG 
TTCGCCCTGGCGGTGCCGGTGTCGGGCATGCTCGCCGGCTGGCTGCTGCTCGGCGAACGCCTCGACCTGGAC 
AGCCTGCTGGCCTGCGCGCTGGTGTTCGTCGGGCTGGCCATCACCCTGTTGCCGGCCAGCCTGCTGCGACGC 
TTCGCCTGGCCGGTGCGGCGGGTGGGATGA