ViewGene

Locus Name:
GeneID:
Location:

GeneID:2680
TrivialName: PA14_49110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49110
PAO1 Ortholog Locus:PA1184
Sequence Length:891
Protein Length:296
Start: 4362225
Stop: 4363115
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04573.1|AE004548_7 (AE004548) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 295/296 (99%), Positives = 296/296 (100%)
Sequence:
ATGGGTGCCGTCCTCCCGCTCCTCGCGCTACGCGCTTTCGTCGAAACCGCCCGCCATGGCAATCTCACCCGC
GCGGCCGCGGCCATGGGCGTCACTCCCGGCGCGGTAAGCCAGCAGCTCAGGGCTCTGCAGGCGCGCACCGGC
GTCGTCCTGTTCCAGCGCTTCAGCCATGGCATGCGCCTGACGCCGGAGGGCGAGCAGGTCTATCCCGGCCTC
CGCCAGGCCTTCGAGCAGATCACCGCGAGCCTTGCCCAGCTGGAGGCGATCAATGCCCGCCAGACCATCACG
GTCAGCACCGAGCCCTCCTTCGCCGCCACCTGGCTGGTGCCGCGCCTCGGTCAATTCAGCGCGTCGCACCCG
CAGGTGGAAGTCCGCGTGGAGGCTACGGCACTGCTCGCCGACCTGCGCCGGGAACGAATCGACGTCGCCATC
CGCCACGGGCTCGGCGACTACCCCGGACTCGACGTGCAGGCGCTGATGGCCCCGCCGCTGATCCCGGTGGCC
AGCCCGCGCCTGCTGGCGGAAGGCCCTGAGATCCGCGAAGCGATCGATTGCCTGGCCTACCCGCTGTTGCAG
GAGTCGGAGCGCAATGACTGGCGCCTGTGGCTGCGGGCGATGGGGGTGGAGGACGACCCGCGCAGCGAGAGA
GGTCCGGCTTTCGCCGACGACCTGCTGCTGGTTCGCGCCGCCGAGGCCGGCCAGGGTATCGCGCTGGTACGG
GAGATCCATGCCCGCGCCGAGATCGCCAGCGGCCGCCTGGCGGTCGCCCTCGAGCGGCCCTGGCCGAGCCGC
TTCGCCTATTACGCGGTGAGCCTGCCAGGAGCGGCGCAACGAGCACCCCTCTCGCTGTTCCTCGCCTGGCTG
CGCGAGCAGGCCGCTGCCGAGGCATAA
Translation:
MGAVLPLLALRAFVETARHGNLTRAAAAMGVTPGAVSQQLRALQARTGVVLFQRFSHGMRLTPEGEQVYPGL
RQAFEQITASLAQLEAINARQTITVSTEPSFAATWLVPRLGQFSASHPQVEVRVEATALLADLRRERIDVAI
RHGLGDYPGLDVQALMAPPLIPVASPRLLAEGPEIREAIDCLAYPLLQESERNDWRLWLRAMGVEDDPRSER
GPAFADDLLLVRAAEAGQGIALVREIHARAEIASGRLAVALERPWPSRFAYYAVSLPGAAQRAPLSLFLAWL
REQAAAEA*
AnnotationID:2688GeneID:2680
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 15:03:44
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:(1) Cytoplasmic
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
 PS00044: Bacterial regulatory proteins, lysR family signature.
Genomic Context:
Comment:
ReferenceID:5363
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:16976
Author/Investigator(s):
Title:
PubMed:
MedLine:
Source:
NCBI Conserved Domain Search.
Reference Type:Blast (text/plain)
Data:PA1184_CDS.cgi
URL:
ReferenceID:22508
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2680

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4400 PA1184_tr translation of PA1184 296 99.66 99.99 0 1483.0
128153 gb|AAG04573.1|AE004548_7 (AE004548) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 296 99.66 99.99 0 1483.0
128154 emb|CAE16632.1| (BX571873) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] 312 47.43 63.78 16 761.0
128155 gb|AAK23101.1| (AE005790) transcriptional regulator, LysR family [Caulobacter crescentus CB15] 347 36.02 49.85 58 521.0
128156 emb|CAA38523.1| (X54719) putative AmpR protein [Pseudomonas aeruginosa] 297 18.18 26.59 163 244.0
GC ORFID: 45682How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1184Glimmer Score:
Start: 591683Stop: 590793
Length: 891
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA1184 translation of PA1184Homolog Bit Score 575.0
Other Homologs: t_PA1184 (ORF: GLIMMER)
GC ORF Sequence
ATGGGTGCCGTCCTCCCGCTCCTCGCGCTACGCGCTTTCGTCGAAACCGCCCGCCATGGCAATCTCACCCGC
GCGGCCGCGGCCATGGGCGTCACTCCCGGCGCGGTAAGCCAGCAGCTCAGGGCTCTGCAGGCGCGCACCGGC
GTCGTCCTGTTCCAGCGCTTCAGCCATGGCATGCGCCTGACGCCGGAGGGCGAGCAGGTCTATCCCGGCCTC
CGCCAGGCCTTCGAGCAGATCACCGCGAGCCTTGCCCAGCTGGAGGCGATCAATGCCCGCCAGACCATCACG
GTCAGCACCGAGCCCTCCTTCGCCGCCACCTGGCTGGTGCCGCGCCTCGGTCAATTCAGCGCGTCGCACCCG
CAGGTGGAAGTCCGCGTGGAGGCTACGGCACTGCTCGCCGACCTGCGCCGGGAACGAATCGACGTCGCCATC
CGCCACGGGCTCGGCGACTACCCCGGACTCGACGTGCAGGCGCTGATGGCCCCGCCGCTGATCCCGGTGGCC
AGCCCGCGCCTGCTGGCGGAAGGCCCTGAGATCCGCGAAGCGATCGATTGCCTGGCCTACCCGCTGTTGCAG
GAGTCGGAGCGCAATGACTGGCGCCTGTGGCTGCGGGCGATGGGGGTGGAGGACGACCCGCGCAGCGAGAGA
GGTCCGGCTTTCGCCGACGACCTGCTGCTGGTTCGCGCCGCCGAGGCCGGCCAGGGTATCGCGCTGGTACGG
GAGATCCATGCCCGCGCCGAGATCGCCAGCGGCCGCCTGGCGGTCGCCCTCGAGCGGCCCTGGCCGAGCCGC
TTCGCCTATTACGCGGTGAGCCTGCCAGGAGCGGCGCAACGAGCACCCCTCTCGCTGTTCCTCGCCTGGCTG
CGCGAGCAGGCCGCTGCCGAGGCATAA