ViewGene
Locus Name:
GeneID:
Location:

GeneID:268
TrivialName: PA14_05920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05920
PAO1 Ortholog Locus:PA0454
Sequence Length:2202
Protein Length:733
Start: 526068
Stop: 523867
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03843.1|AE004483_1 (AE004483) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 732/733 (99%), Positives = 732/733 (99%)
Sequence:
ATGCCGCCCTCTTCGCTGACACACACGCTCCGCCGCCTCTGGGCCCTCGACAAGTTCGCCTACAGCCTGCGG
GTGTTCATCGCCTTGGCCGGCGCCCTGCTGCTGTGCTGGTGGCAGGACCGCATCGAGCTGCTGATCCCGCTG
TTCCTCGGGATCATCGCCAGCGCCCTGGCGGAGACCGACGACAACTGGCTCGGCCGCCTGCAAGCGCTGCTG
GTGACCCTGCTGTGCTTCAGCGTCGCCGCCTTCGCCGTCGAGTTGCTGTTCCCCTATCCCTGGCTGTTCGTT
TCCGGGATGGCGCTGTCGGCGTTCGGCATGATCCTCCTCGGCGCCCTCGGCGAGCGCTATGCGGCGATCGCC
TCGGCGACCCTGATCCTCTCGATCTACACCATGATCGGCGTGGACCAGCGCGGCGGTGAGGTCGCCGATGTC
TGGCACGAACCGCTGCTGCTGGTGGCCGGGGCGGCCTGGTACGGGCTGCTCTCGGTGCTGTGGAACGCGCTG
TTCTCCAACCAGCCGGTGCAGCAGAGTCTTTCCCGCCTGTATTTCGAGCTGGGCGAATACCTGAGGATCAAG
TCGAGCCTGTTCGAACCGTTGCGCCAGCTCGACGTGGAGGGCCAGCGCCTCGCCCTGGCACGGCAGAACGGC
AAGGTGGTGGTGGCGCTGAACCAGGCCAAGGAGACCATTCTCAACCGCCTCGGCCATGGCCGGCCGGGCCCC
AAGGTGAGCCGCTACCTGAAGCTCTATTTCATCGCCCAGGACGTCCACGAGCGCGCCAGTTCCTCGCACTAC
CCGTACAACCGGCTGGCCGAGGCGTTCTTCCACAGCGACGTGCTGTTCCGCTGCCAGCGCCTGCTCAACCAG
CAGGGCAAGGCCTGCCAGGCCCTGGCGCGGGCTATCCGCCTGCGCCAGCCGTTCGACTACGCCGACCGCGAG
CTGGCCCTGGAAGACCTCCAGGCCTCGCTCGAACACCTGCGCCAGCAGAGCAACCCGGCCTGGAAGGGCCTG
CTTCGCTCGCTCGGCGCCCTGGCCGCCAACCTCACCACGCTGGACCGCAAGCTGGCCGGGGCGAGCAACCCG
GACGCCATCGCCGACGAACAGGACAGCGCCCTGCTCGACCGCTCGCCGCGCAGCCTGAAGGATGCCTTCGAG
CGCCTGCGCCAGCAGCTCACCCCGACCTCGCTGCTGTTCCGCCACGGCCTGCGCATGGCCCTGGCGCTGACC
GCCGGCTACGGCGTGCTGCACTGGATCCATCCGACCCAGGGCTACTGGATACTGCTCACCACGGTGTTCGTC
TGCCAGCCCAACTATGGCGCGACCCGCCTGCGCCTGGTGCAGCGGATCCTCGGTACGGTGGTCGGCCTGGTG
GTCGGCTGGGCGCTGATCGACCTGTTCCCCAGCCCGCTGGTGCAGTCGCTGTTCGCGGTCGCCGCCGGGGTC
GCCTTCTTCGCCACCCGCAGCAGTCGCTATACCCTGGCGACGGCGGCGATCACCCTGCTGGTGCTGTTCTGC
TTCAACCAGGTCGGCGATGGCTACGGGCTGATCCTGCCCCGCCTGTTCGATACCTTGCTGGGCAGCCTGATC
GCCGGCCTCGCGGTGTTCCTGGTGCTGCCCGATTGGCAGGGCCGCCGGCTCAACCGCATGCTCGCCAACACC
CTCGCCTGCAACAGCCGTTACCTGCGGCAGATCATGCAGCAGTACGCCACCGGCAAGCGCGACGACCTCGAC
TACCGCACCGCCCGGCGCAACGCGCACAACGCCGACGCAGCGCTGTCGACCACCCTGTCGAACATGCTCCTG
GAGCCCGGCCACTTCAGGAAGGACGCCGAGATCGGCTTCCGCTTCCTGGTCCTCTCGCACACCCTGCTCAGC
TATCTATCCGGTCTCGGCGCGCACCGCGAAAGCCTGCCCGAGGACGCCAGCGACGGCCTCCTGGAGCGCGCC
GCCGAGCGGCTCTCCGCCAGCCTCGAGGAAATCGCCGCGAGCCTGGAACAGAAACGCCCGGTCGCCATCTAC
AGCGAAGAGGAGGAAGCGCTGGCCAAGGAACTGGAGCAGATGCCCGAGGACATGGACGACAGCCATCGCCTG
GTACAGACCCAACTGGCGCACATCTGCCGCCAGCTCGCCCCGCTGCGCACCCTGGCCGCGCACTTGCTGAAG
AAGGAACTGGCCGGCGCGCAGCCGCTGCCAGGCCAGCCTTAG
Translation:
MPPSSLTHTLRRLWALDKFAYSLRVFIALAGALLLCWWQDRIELLIPLFLGIIASALAETDDNWLGRLQALL
VTLLCFSVAAFAVELLFPYPWLFVSGMALSAFGMILLGALGERYAAIASATLILSIYTMIGVDQRGGEVADV
WHEPLLLVAGAAWYGLLSVLWNALFSNQPVQQSLSRLYFELGEYLRIKSSLFEPLRQLDVEGQRLALARQNG
KVVVALNQAKETILNRLGHGRPGPKVSRYLKLYFIAQDVHERASSSHYPYNRLAEAFFHSDVLFRCQRLLNQ
QGKACQALARAIRLRQPFDYADRELALEDLQASLEHLRQQSNPAWKGLLRSLGALAANLTTLDRKLAGASNP
DAIADEQDSALLDRSPRSLKDAFERLRQQLTPTSLLFRHGLRMALALTAGYGVLHWIHPTQGYWILLTTVFV
CQPNYGATRLRLVQRILGTVVGLVVGWALIDLFPSPLVQSLFAVAAGVAFFATRSSRYTLATAAITLLVLFC
FNQVGDGYGLILPRLFDTLLGSLIAGLAVFLVLPDWQGRRLNRMLANTLACNSRYLRQIMQQYATGKRDDLD
YRTARRNAHNADAALSTTLSNMLLEPGHFRKDAEIGFRFLVLSHTLLSYLSGLGAHRESLPEDASDGLLERA
AERLSASLEEIAASLEQKRPVAIYSEEEEALAKELEQMPEDMDDSHRLVQTQLAHICRQLAPLRTLAAHLLK
KELAGAQPLPGQP*
AnnotationID:278GeneID:268
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 13:01:54
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA0454
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05976,COG1289
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58437.1| (AE016874) membrane protein, TIGR01666 [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 732

 Score = 1079 bits (2791), Expect = 0.0
 Identities = 537/722 (74%), Positives = 622/722 (86%), Gaps = 2/722 (0%)

>gb|AAO07094.1|AE016808_114 (AE016808) Predicted membrane protein [Vibrio vulnificus CMCP6]
          Length = 717

 Score =  630 bits (1626), Expect = e-180
 Identities = 327/716 (45%), Positives = 469/716 (65%), Gaps = 7/716 (0%)






 
Structural Features:
pfam05976, DUF893, Bacterial membrane protein of unknown function (DUF893). 
CD-Length = 707 residues, 100.0% aligned
Score =  923 bits (2387), Expect = 0.0
Identities = 403/711 (56%), Positives = 505/711 (71%), Gaps = 8/711 (1%)

COG1289, Predicted membrane protein 
CD-Length = 674 residues, 100.0% aligned
Score =  382 bits (982), Expect = 8e-107
Identities = 258/723 (35%), Positives = 326/723 (45%), Gaps = 53/723 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:539




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17681




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33775




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:268_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:268
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
447
                           PA0454_tr
                           translation of PA0454
                           733
                           99.86
                           99.86
                           0
                           3717.0
     

     
     
23845
                           gb|AAG03843.1|AE004483_1
                           (AE004483) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           733
                           99.86
                           99.86
                           0
                           3717.0
     

     
     
23846
                           gb|AAN70521.1|AE016694_4
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           738
                           73.44
                           84.55
                           16
                           2813.0
     

     
     
23847
                           gb|AAO58437.1|
                           (AE016874) membrane protein, TIGR01666 [Pseudomonas syringae pv. tomato str. DC3000]
                           736
                           73.36
                           84.91
                           7
                           2790.0
     

     
     
23848
                           gb|AAM35399.1|
                           (AE011677) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           741
                           56.41
                           71.12
                           12
                           2063.0
     

     






      

          
GC ORFID: 43270How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0454Glimmer Score: 

          
Start: 6327410Stop: 6325209

          
Length: 2202


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0454 translation of PA0454Homolog Bit Score 1436.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3690 (ORF: BLASTX 1076.0), t_PA0454 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCCCTCTTCGCTGACACACACGCTCCGCCGCCTCTGGGCCCTCGACAAGTTCGCCTACAGCCTGCGG 
GTGTTCATCGCCTTGGCCGGCGCCCTGCTGCTGTGCTGGTGGCAGGACCGCATCGAGCTGCTGATCCCGCTG 
TTCCTCGGGATCATCGCCAGCGCCCTGGCGGAGACCGACGACAACTGGCTCGGCCGCCTGCAAGCGCTGCTG 
GTGACCCTGCTGTGCTTCAGCGTCGCCGCCTTCGCCGTCGAGTTGCTGTTCCCCTATCCCTGGCTGTTCGTT 
TCCGGGATGGCGCTGTCGGCGTTCGGCATGATCCTCCTCGGCGCCCTCGGCGAGCGCTATGCGGCGATCGCC 
TCGGCGACCCTGATCCTCTCGATCTACACCATGATCGGCGTGGACCAGCGCGGCGGTGAGGTCGCCGATGTC 
TGGCACGAACCGCTGCTGCTGGTGGCCGGGGCGGCCTGGTACGGGCTGCTCTCGGTGCTGTGGAACGCGCTG 
TTCTCCAACCAGCCGGTGCAGCAGAGTCTTTCCCGCCTGTATTTCGAGCTGGGCGAATACCTGAGGATCAAG 
TCGAGCCTGTTCGAACCGTTGCGCCAGCTCGACGTGGAGGGCCAGCGCCTCGCCCTGGCACGGCAGAACGGC 
AAGGTGGTGGTGGCGCTGAACCAGGCCAAGGAGACCATTCTCAACCGCCTCGGCCATGGCCGGCCGGGCCCC 
AAGGTGAGCCGCTACCTGAAGCTCTATTTCATCGCCCAGGACGTCCACGAGCGCGCCAGTTCCTCGCACTAC 
CCGTACAACCGGCTGGCCGAGGCGTTCTTCCACAGCGACGTGCTGTTCCGCTGCCAGCGCCTGCTCAACCAG 
CAGGGCAAGGCCTGCCAGGCCCTGGCGCGGGCTATCCGCCTGCGCCAGCCGTTCGACTACGCCGACCGCGAG 
CTGGCCCTGGAAGACCTCCAGGCCTCGCTCGAACACCTGCGCCAGCAGAGCAACCCGGCCTGGAAGGGCCTG 
CTTCGCTCGCTCGGCGCCCTGGCCGCCAACCTCACCACGCTGGACCGCAAGCTGGCCGGGGCGAGCAACCCG 
GACGCCATCGCCGACGAACAGGACAGCGCCCTGCTCGACCGCTCGCCGCGCAGCCTGAAGGATGCCTTCGAG 
CGCCTGCGCCAGCAGCTCACCCCGACCTCGCTGCTGTTCCGCCACGGCCTGCGCATGGCCCTGGCGCTGACC 
GCCGGCTACGGCGTGCTGCACTGGATCCATCCGACCCAGGGCTACTGGATACTGCTCACCACGGTGTTCGTC 
TGCCAGCCCAACTATGGCGCGACCCGCCTGCGCCTGGTGCAGCGGATCCTCGGTACGGTGGTCGGCCTGGTG 
GTCGGCTGGGCGCTGATCGACCTGTTCCCCAGCCCGCTGGTGCAGTCGCTGTTCGCGGTCGCCGCCGGGGTC 
GCCTTCTTCGCCACCCGCAGCAGTCGCTATACCCTGGCGACGGCGGCGATCACCCTGCTGGTGCTGTTCTGC 
TTCAACCAGGTCGGCGATGGCTACGGGCTGATCCTGCCCCGCCTGTTCGATACCTTGCTGGGCAGCCTGATC 
GCCGGCCTCGCGGTGTTCCTGGTGCTGCCCGATTGGCAGGGCCGCCGGCTCAACCGCATGCTCGCCAACACC 
CTCGCCTGCAACAGCCGTTACCTGCGGCAGATCATGCAGCAGTACGCCACCGGCAAGCGCGACGACCTCGAC 
TACCGCACCGCCCGGCGCAACGCGCACAACGCCGACGCAGCGCTGTCGACCACCCTGTCGAACATGCTCCTG 
GAGCCCGGCCACTTCAGGAAGGACGCCGAGATCGGCTTCCGCTTCCTGGTCCTCTCGCACACCCTGCTCAGC 
TATCTATCCGGTCTCGGCGCGCACCGCGAAAGCCTGCCCGAGGACGCCAGCGACGGCCTCCTGGAGCGCGCC 
GCCGAGCGGCTCTCCGCCAGCCTCGAGGAAATCGCCGCGAGCCTGGAACAGAAACGCCCGGTCGCCATCTAC 
AGCGAAGAGGAGGAAGCGCTGGCCAAGGAACTGGAGCAGATGCCCGAGGACATGGACGACAGCCATCGCCTG 
GTACAGACCCAACTGGCGCACATCTGCCGCCAGCTCGCCCCGCTGCGCACCCTGGCCGCGCACTTGCTGAAG 
AAGGAACTGGCCGGCGCGCAGCCGCTGCCAGGCCAGCCTTAG