ViewGene
Locus Name:
GeneID:
Location:

GeneID:2679
TrivialName: PA14_52920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52920
PAO1 Ortholog Locus:PA0877
Sequence Length:897
Protein Length:298
Start: 4691211
Stop: 4692107
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04266.1|AE004522_8 (AE004522) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 298/298 (100%), Positives = 298/298 (100%)
Sequence:
ATGCATTTCGATCTCGCCGACCTGCGCCTGTTCATCCATATCGCCGAGTCGCCCAGCCTGACTCAGGGCGCG
CGCCGCGCCTTCCTTTCCCCGGCCGCCGCCAGCGCACGGGTCAAGGCGCTCGAAGGCCAGCTCGGCAGCCGC
CTGCTGTACCGCGACAGCCGCGGCGTCGAACTGACCCCGGCGGGCCAGCGCCTGCTACAGCACGCGCGGCTG
ATCATGCGCCAGGTGGAATACCTGAAGAGCGAGTTCACCGAGTACGGCAGCGACGCCGCCGGGCATATCCGC
ATCTTCGCCAATACCACCGCGGTCACCGAATTCCTCCCGGAAATCCTCGCCGGCTTCCTTGCCGCTCGTCCC
GGGGTCACCGTCGACCTGCAGGAACGCCTCAGCCGCGACATTGTCCGCGGCGTGCTGGACGGCTCCACCGAC
CTCGGCATCATCGCCGGGCCGGTGGCGGCCAGTGGCCTGCAGGTCCTGCATTTCAGCACCGACCGCCTGGTG
ATGGCGGTGCCCCAAGGCCATCCGCTGGCCGGACAGGCCAGGGTACGCCTGCGCGACACCCTGCAGTTCCAG
CATATCGGCCTGCCCGAGGGCACCACCCTGCACGCCTTCCTGTACGAACGGGTGGAGCAGATGGGCGAGCAG
CTATCGCTGCGCATCCAGGTCTCCAGCTTCGAGGCGATCTGCCGGATGATCGAGGGCGGCGTCGGTATCGGC
GTGATCCCGCAGTCCGCCGCGCGCCGCCACAGCCGGACGATGAAACTGGCGACCATCGAACTCGACGAGCCC
TGGGCGATCCGCGAGCGCAGCCTGCTGGTACGCGACCTGGAAGCACTGCCGAGTTGCCTGCGGGCGTTGATC
GAGGAGTTGCAGAGGGTGGGAGACAGCCTGTAG
Translation:
MHFDLADLRLFIHIAESPSLTQGARRAFLSPAAASARVKALEGQLGSRLLYRDSRGVELTPAGQRLLQHARL
IMRQVEYLKSEFTEYGSDAAGHIRIFANTTAVTEFLPEILAGFLAARPGVTVDLQERLSRDIVRGVLDGSTD
LGIIAGPVAASGLQVLHFSTDRLVMAVPQGHPLAGQARVRLRDTLQFQHIGLPEGTTLHAFLYERVEQMGEQ
LSLRIQVSSFEAICRMIEGGVGIGVIPQSAARRHSRTMKLATIELDEPWAIRERSLLVRDLEALPSCLRALI
EELQRVGDSL*
AnnotationID:2687GeneID:2679
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 13:01:00
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:PA0877
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583, pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]. Score: 132, 1e-31
pfam03466, LysR_substrate, LysR substrate binding domain. Score: 122, 9e-29






   
Genomic Context:






   
Comment:


















    ReferenceID:5361




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22506




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2679
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4399
                           PA0877_tr
                           translation of PA0877
                           298
                           99.99
                           99.99
                           0
                           1481.0
     

     
     
128133
                           gb|AAG04266.1|AE004522_8
                           (AE004522) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           298
                           99.99
                           99.99
                           0
                           1481.0
     

     
     
128134
                           emb|CAE33451.1|
                           (BX640446) probable transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           301
                           46.84
                           66.77
                           3
                           736.0
     

     
     
128135
                           emb|CAE38283.1|
                           (BX640432) probable transcriptional regulator [Bordetella parapertussis]
                           301
                           46.84
                           66.77
                           3
                           736.0
     

     
     
128136
                           emb|CAE41879.1|
                           (BX640415) probable transcriptional regulator [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           301
                           46.84
                           66.77
                           3
                           736.0
     

     






      

          
GC ORFID: 45681How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0877Glimmer Score: 

          
Start: 262696Stop: 261800

          
Length: 897


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0877 translation of PA0877Homolog Bit Score 575.0

          
Other Homologs:  t_PA0877 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATTTCGATCTCGCCGACCTGCGCCTGTTCATCCATATCGCCGAGTCGCCCAGCCTGACTCAGGGCGCG 
CGCCGCGCCTTCCTTTCCCCGGCCGCCGCCAGCGCACGGGTCAAGGCGCTCGAAGGCCAGCTCGGCAGCCGC 
CTGCTGTACCGCGACAGCCGCGGCGTCGAACTGACCCCGGCGGGCCAGCGCCTGCTACAGCACGCGCGGCTG 
ATCATGCGCCAGGTGGAATACCTGAAGAGCGAGTTCACCGAGTACGGCAGCGACGCCGCCGGGCATATCCGC 
ATCTTCGCCAATACCACCGCGGTCACCGAATTCCTCCCGGAAATCCTCGCCGGCTTCCTTGCCGCTCGTCCC 
GGGGTCACCGTCGACCTGCAGGAACGCCTCAGCCGCGACATTGTCCGCGGCGTGCTGGACGGCTCCACCGAC 
CTCGGCATCATCGCCGGGCCGGTGGCGGCCAGTGGCCTGCAGGTCCTGCATTTCAGCACCGACCGCCTGGTG 
ATGGCGGTGCCCCAAGGCCATCCGCTGGCCGGACAGGCCAGGGTACGCCTGCGCGACACCCTGCAGTTCCAG 
CATATCGGCCTGCCCGAGGGCACCACCCTGCACGCCTTCCTGTACGAACGGGTGGAGCAGATGGGCGAGCAG 
CTATCGCTGCGCATCCAGGTCTCCAGCTTCGAGGCGATCTGCCGGATGATCGAGGGCGGCGTCGGTATCGGC 
GTGATCCCGCAGTCCGCCGCGCGCCGCCACAGCCGGACGATGAAACTGGCGACCATCGAACTCGACGAGCCC 
TGGGCGATCCGCGAGCGCAGCCTGCTGGTACGCGACCTGGAAGCACTGCCGAGTTGCCTGCGGGCGTTGATC 
GAGGAGTTGCAGAGGGTGGGAGACAGCCTGTAG