ViewGene
Locus Name:
GeneID:
Location:

GeneID:2678
TrivialName: PA14_53560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53560
PAO1 Ortholog Locus:PA0827
Sequence Length:879
Protein Length:292
Start: 4748791
Stop: 4749669
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04216.1|AE004517_11 (AE004517) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 291/292 (99%), Positives = 291/292 (99%)
Sequence:
GTGCCGACCCTATCACGCCGCCTGCTCTGGCCGCTGGCCATCCTTTTACTGGTTCTCGGCCGCCCGCTCGCG
GCCGCCGACCTCTACTACCTCGGCCAGCGCATCCCGGACATCCAGAAGCCCTGGGACAGCCACGACTACCAG
GTGCTGATCGACGCCCTGAAGAAGATCGAGGAAACCCAGAAAAACGCCCTGCCGCGACGCAGCGGCGAATTC
ACCGGGCCGCTCTACCTGCGCATGGTCAGCGAGGAAAACTTCCGCCCGCAGCTGAACATCTACAGCCCCCTG
GAGATCCGCCAGAACGAGGCCCGCGAAGTGCTGTTCAAGCTCAAGGAGCTGATGCGCCTGTACTTCGACTTC
CGCGCCGCCAAGCAGCCCTACGGCGCCGAAGCGCTGGGCCTGATGAGCTACTCGCTGCGCGAGCAGTCGATC
CTGTTCACCCTCACCGTCGAATTCTGGATGACCCTGTCCCAGGCCGAACAGCGCAACCCCGCGCGCCTGCAG
GGCATGCAGGAAACCAAGGCGGCCGCGGCGATGCTCACCGGCAGCGCCCTCGACTACCTCGGCCTCACCGCC
CAGTTCGAGCGCCAGGACCTGGTGCTCTACTCCGCCGAACTGGCCAAGGAAATGCCCGAGCTGTTCATCCAC
CTGCCCTCCCCGGTGCGCGCCCAGTTGCTGGAACGCATCGCCGCTTTCGCCAAGGACCACCCTTACCCCGAG
GTCCGCGACAACATGCGCGACCTGCAACCGGTGTTGCAGGCGATCCAGGCCGACGTGGAAAAACAGCTGGCG
CCCGGGCGGAACGCCAAGGCACCGGACAAACCCCTGGACCTGAGCCCGCCTCCGGAGGGGAAACCCAGCGGC
GTCAACGGTTTATGA
Translation:
MPTLSRRLLWPLAILLLVLGRPLAAADLYYLGQRIPDIQKPWDSHDYQVLIDALKKIEETQKNALPRRSGEF
TGPLYLRMVSEENFRPQLNIYSPLEIRQNEAREVLFKLKELMRLYFDFRAAKQPYGAEALGLMSYSLREQSI
LFTLTVEFWMTLSQAEQRNPARLQGMQETKAAAAMLTGSALDYLGLTAQFERQDLVLYSAELAKEMPELFIH
LPSPVRAQLLERIAAFAKDHPYPEVRDNMRDLQPVLQAIQADVEKQLAPGRNAKAPDKPLDLSPPPEGKPSG
VNGL*
AnnotationID:2686GeneID:2678
AnnotatorUID: danlee
Modification Date/Time: 2004-04-29 14:02:07
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0827
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14645




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22504




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2678
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4398
                           PA0827_tr
                           translation of PA0827
                           292
                           99.65
                           99.65
                           0
                           1483.0
     

     
     
128132
                           gb|AAG04216.1|AE004517_11
                           (AE004517) hypothetical protein PA0827 [Pseudomonas aeruginosa PAO1]
                           292
                           99.31
                           99.65
                           0
                           1480.0
     

     






      

          
GC ORFID: 45680How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0827Glimmer Score: 

          
Start: 205116Stop: 204238

          
Length: 879


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0827 translation of PA0827Homolog Bit Score 575.0

          
Other Homologs:  t_PA0827 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCGACCCTATCACGCCGCCTGCTCTGGCCGCTGGCCATCCTTTTACTGGTTCTCGGCCGCCCGCTCGCG 
GCCGCCGACCTCTACTACCTCGGCCAGCGCATCCCGGACATCCAGAAGCCCTGGGACAGCCACGACTACCAG 
GTGCTGATCGACGCCCTGAAGAAGATCGAGGAAACCCAGAAAAACGCCCTGCCGCGACGCAGCGGCGAATTC 
ACCGGGCCGCTCTACCTGCGCATGGTCAGCGAGGAAAACTTCCGCCCGCAGCTGAACATCTACAGCCCCCTG 
GAGATCCGCCAGAACGAGGCCCGCGAAGTGCTGTTCAAGCTCAAGGAGCTGATGCGCCTGTACTTCGACTTC 
CGCGCCGCCAAGCAGCCCTACGGCGCCGAAGCGCTGGGCCTGATGAGCTACTCGCTGCGCGAGCAGTCGATC 
CTGTTCACCCTCACCGTCGAATTCTGGATGACCCTGTCCCAGGCCGAACAGCGCAACCCCGCGCGCCTGCAG 
GGCATGCAGGAAACCAAGGCGGCCGCGGCGATGCTCACCGGCAGCGCCCTCGACTACCTCGGCCTCACCGCC 
CAGTTCGAGCGCCAGGACCTGGTGCTCTACTCCGCCGAACTGGCCAAGGAAATGCCCGAGCTGTTCATCCAC 
CTGCCCTCCCCGGTGCGCGCCCAGTTGCTGGAACGCATCGCCGCTTTCGCCAAGGACCACCCTTACCCCGAG 
GTCCGCGACAACATGCGCGACCTGCAACCGGTGTTGCAGGCGATCCAGGCCGACGTGGAAAAACAGCTGGCG 
CCCGGGCGGAACGCCAAGGCACCGGACAAACCCCTGGACCTGAGCCCGCCTCCGGAGGGGAAACCCAGCGGC 
GTCAACGGTTTATGA