ViewGene
Locus Name:
GeneID:
Location:

GeneID:2677
TrivialName: PA14_11980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11980
PAO1 Ortholog Locus:PA4009
Sequence Length:858
Protein Length:285
Start: 1035752
Stop: 1036609
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07396.1|AE004818_2 (AE004818) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 284/285 (99%), Positives = 284/285 (99%)
Sequence:
ATGGTTGAACGAGAGCGTGTCGACAGTGCCCACATCACGCCCAGCGCCCATTACACCGGCTACGTCTGGTTC
CGCCATCGACTCGCCGAACCGGCCTTCGCCACCGTCTTCGGCCGCTGGGTACACGGCTTCGTCGCGCCGATC
AACTGGGGCGCGCAGCTCGGTTTCGGGCTGAACATCGAGGATTTCCTGTTACAAAGACACCTCATGATCGAC
GCGCGCCTGACCCAGGCCGTCGAACGCGAGGGAGTGGTCCAGGTGGTGGAAATGGCCTGCGGACTCTCGCCG
CGCGGGCGACGCTTCCGGCAACGCTATCCACAGTTGCGCTACCTGGAGGCCGACCTGCCGCCGATGGCCGCG
CGCAAGGCGGCGCTGCTTCGCGAGCAGGGTTGGCTGGGCCCGGAGCACGCGGTGGCGGCTGTGGATATCCTC
GCCGAGGACGGCGAGCGCTGCCTCGCCGCGCTGTTCGCCGGGCTCGACCGCGAGCGCCCGCTGGTGGTGATC
ACCGAGGGGCTGGTGAACTATTTCCAGCGCCCGGTGATCGAGGCCTTCTGGAGTCGCCTGGCGACCGAACTT
AAACGCTTCCCCCAGGGCACCTACCTGACCGACCTCTATCCCGATCTCCGCGAGCACCCGCGCTACCGGCAG
ATCCGCTGGGGAGTGGGGATCATCGGGCGGCTGACGCGGGGAAGCTATCCGTTGCACTACCGCAATGCCGCG
GAAATCGAGGCGGCCTTCGCCCGCTGCGGCTTTGCCTCCACCCTGGTGCTCGACCCGCAGCGCGAAGGCGCC
GCCCTGGGCTTGCCGCAGGGACGCCTGCCGAGCCTGGTGCGGGTGATCGAAAGCCGCACGGCATAG
Translation:
MVERERVDSAHITPSAHYTGYVWFRHRLAEPAFATVFGRWVHGFVAPINWGAQLGFGLNIEDFLLQRHLMID
ARLTQAVEREGVVQVVEMACGLSPRGRRFRQRYPQLRYLEADLPPMAARKAALLREQGWLGPEHAVAAVDIL
AEDGERCLAALFAGLDRERPLVVITEGLVNYFQRPVIEAFWSRLATELKRFPQGTYLTDLYPDLREHPRYRQ
IRWGVGIIGRLTRGSYPLHYRNAAEIEAAFARCGFASTLVLDPQREGAALGLPQGRLPSLVRVIESRTA*
AnnotationID:2685GeneID:2677
AnnotatorUID: urbach
Modification Date/Time: 2004-09-14 11:11:40
Gene Name:
Confidence Code:3
GeneProduct:possible O-methyltransferase
Cell Localization:()
Synonyms:PA4009
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3315
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|12649 COG3315, COG3315, O-Methyltransferase involved in polyketide
biosynthesis [Secondary metabolites biosynthesis,
transport, and catabolism]
Length = 297
Score =  174 bits (442), Expect = 2e-44
Identities = 80/289 (27%), Positives = 111/289 (38%), Gaps = 9/289 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5357




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22502




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2677
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4397
                           PA4009_tr
                           translation of PA4009
                           285
                           99.64
                           99.64
                           0
                           1484.0
     

     
     
128131
                           gb|AAG07396.1|AE004818_2
                           (AE004818) hypothetical protein PA4009 [Pseudomonas aeruginosa PAO1]
                           285
                           99.64
                           99.64
                           0
                           1484.0
     

     






      

          
GC ORFID: 45679How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4009Glimmer Score: 

          
Start: 3918186Stop: 3917329

          
Length: 858


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4009 translation of PA4009Homolog Bit Score 576.0

          
Other Homologs:  t_PA4009 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTTGAACGAGAGCGTGTCGACAGTGCCCACATCACGCCCAGCGCCCATTACACCGGCTACGTCTGGTTC 
CGCCATCGACTCGCCGAACCGGCCTTCGCCACCGTCTTCGGCCGCTGGGTACACGGCTTCGTCGCGCCGATC 
AACTGGGGCGCGCAGCTCGGTTTCGGGCTGAACATCGAGGATTTCCTGTTACAAAGACACCTCATGATCGAC 
GCGCGCCTGACCCAGGCCGTCGAACGCGAGGGAGTGGTCCAGGTGGTGGAAATGGCCTGCGGACTCTCGCCG 
CGCGGGCGACGCTTCCGGCAACGCTATCCACAGTTGCGCTACCTGGAGGCCGACCTGCCGCCGATGGCCGCG 
CGCAAGGCGGCGCTGCTTCGCGAGCAGGGTTGGCTGGGCCCGGAGCACGCGGTGGCGGCTGTGGATATCCTC 
GCCGAGGACGGCGAGCGCTGCCTCGCCGCGCTGTTCGCCGGGCTCGACCGCGAGCGCCCGCTGGTGGTGATC 
ACCGAGGGGCTGGTGAACTATTTCCAGCGCCCGGTGATCGAGGCCTTCTGGAGTCGCCTGGCGACCGAACTT 
AAACGCTTCCCCCAGGGCACCTACCTGACCGACCTCTATCCCGATCTCCGCGAGCACCCGCGCTACCGGCAG 
ATCCGCTGGGGAGTGGGGATCATCGGGCGGCTGACGCGGGGAAGCTATCCGTTGCACTACCGCAATGCCGCG 
GAAATCGAGGCGGCCTTCGCCCGCTGCGGCTTTGCCTCCACCCTGGTGCTCGACCCGCAGCGCGAAGGCGCC 
GCCCTGGGCTTGCCGCAGGGACGCCTGCCGAGCCTGGTGCGGGTGATCGAAAGCCGCACGGCATAG