ViewGene

Locus Name:
GeneID:
Location:

GeneID:2676
TrivialName: PA14_35140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35140
PAO1 Ortholog Locus:PA2276
Sequence Length:891
Protein Length:296
Start: 3127303
Stop: 3126413
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05664.1|AE004653_7 (AE004653) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 292/296 (98%), Positives = 293/296 (98%)
Sequence:
ATGAGCACTACTTCCACCGACATGGCGTCGCTGATCACCACCCTGCAAGGCGAACCGGGTTTCGACGCCACC
CGCATCCCCGGCGTCCGCCTGATGCGCGCCGAACAGGCCTATCCGCGCAGCCCGGTGTTCTACGAGCCGCGC
ATCTGCATCCTCGCCCAGGGCCAGAAGATCGGTTTCCTCGGTGGCGAAACCTACCGCTATGACGCCGAACGC
TACCTGGTGATGTCGGTGCCCCTGCCGTTCGAATGCGAAACCCACGCCTCCGCCGCCGAGCCCTTGCTGGGA
GTGAGCGTCGACGTGGAAATCGGCACCTTGAAGGAACTGCTGCTACAGATGGAAGAGGCTCCCGGCAGCGAC
GACGACAACGAACTGGCGCCCAGCGCGCCGATGGCTTCGGTACCGCTGGACGCGGGGATGGCCGATGCGGTG
ATGCGCCTGCTGCGCTGCCTGCAGAGCCCGCTGGACAGCCATATCCTCGGCCCGCAACTGGTCCGCGAGATC
ATCTTCCGCGCCCTGCGCAGCGAGCAGGGCAACGCCCTGCGTGCGGTGGCCGGCCGGCACAGCGGCTACGGG
CGCATGGCCAGGGCCCTGCGGCGCATCCACACCGACTACGCCAGTGCGCTGGACATCGACACCCTGGCTCGC
GAGGCGAACATGAGCGTGTCGACCTTCCACCACAACTTCAAGGCGATGACCTTCACCTCGCCCCTCCAGTAC
CTGAAGAGCGTGCGCCTGTACAAGGCCTGGAGCCTGATGGTGCAGGACGGGCTGAACGCCAGTACCGCCGCC
AACCAGGTCGGCTACGAGAGCCCCTCGCAGTTCAGCCGCGAGTTCAAGCGCTACTTCGGGCGCACGCCGAGC
GAGGAAGTCCAGGCCGCCCGCCGCTAG
Translation:
MSTTSTDMASLITTLQGEPGFDATRIPGVRLMRAEQAYPRSPVFYEPRICILAQGQKIGFLGGETYRYDAER
YLVMSVPLPFECETHASAAEPLLGVSVDVEIGTLKELLLQMEEAPGSDDDNELAPSAPMASVPLDAGMADAV
MRLLRCLQSPLDSHILGPQLVREIIFRALRSEQGNALRAVAGRHSGYGRMARALRRIHTDYASALDIDTLAR
EANMSVSTFHHNFKAMTFTSPLQYLKSVRLYKAWSLMVQDGLNASTAANQVGYESPSQFSREFKRYFGRTPS
EEVQAARR*
AnnotationID:2684GeneID:2676
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 09:09:11
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA2276
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam06719,COG2207
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAM87046.1|AE013953_2 (AE013953) putative AraC-type regulatory protein [Yersinia pestis
           KIM]
          Length = 297

 Score =  261 bits (668), Expect = 3e-69
 Identities = 138/290 (47%), Positives = 187/290 (64%), Gaps = 7/290 (2%)

>gb|AAL22037.1| (AE008845) putative AraC/XylS family transcriptional regulator
           [Salmonella typhimurium LT2]
          Length = 305

 Score =  254 bits (649), Expect = 4e-67
 Identities = 134/289 (46%), Positives = 188/289 (65%), Gaps = 5/289 (1%)

>gb|AAP18345.1| (AE016988) putative ARAC-type regulatory protein [Shigella flexneri
           2a str. 2457T]
          Length = 375

 Score =  248 bits (634), Expect = 2e-65
 Identities = 132/291 (45%), Positives = 184/291 (63%), Gaps = 9/291 (3%)

Structural Features:
pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus.
CD-Length = 156 residues, 100.0% aligned
Score =  187 bits (477), Expect = 1e-48
Identities = 75/159 (47%), Positives = 98/159 (61%), Gaps = 4/159 (2%)

COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
CD-Length = 127 residues,  97.6% aligned
Score = 96.9 bits (240), Expect = 2e-21
Identities = 50/124 (40%), Positives = 64/124 (51%)
Genomic Context:
Comment:
ReferenceID:5355
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22500
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32505
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2676_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2676

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4395 PA2276_tr translation of PA2276 296 98.64 98.98 0 1484.0
128109 gb|AAG05664.1|AE004653_7 (AE004653) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 296 98.64 98.98 0 1484.0
128110 gb|AAM87046.1|AE013953_2 (AE013953) putative AraC-type regulatory protein [Yersinia pestis KIM] 302 45.69 62.25 11 668.0
128111 emb|CAC89532.1| (AJ414144) AraC-family regulatory protein [Yersinia pestis CO92] 302 45.69 62.25 11 668.0
128112 gb|AAL22037.1| (AE008845) putative AraC/XylS family transcriptional regulator [Salmonella typhimurium LT2] 313 43.45 61.34 25 653.0
GC ORFID: 45678How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2276Glimmer Score:
Start: 1826613Stop: 1827503
Length: 891
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2276 translation of PA2276Homolog Bit Score 576.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene978 (ORF: BLASTX 234.0), t_PA1380 (ORF: BLASTX 231.0), t_PA2276 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCACTACTTCCACCGACATGGCGTCGCTGATCACCACCCTGCAAGGCGAACCGGGTTTCGACGCCACC
CGCATCCCCGGCGTCCGCCTGATGCGCGCCGAACAGGCCTATCCGCGCAGCCCGGTGTTCTACGAGCCGCGC
ATCTGCATCCTCGCCCAGGGCCAGAAGATCGGTTTCCTCGGTGGCGAAACCTACCGCTATGACGCCGAACGC
TACCTGGTGATGTCGGTGCCCCTGCCGTTCGAATGCGAAACCCACGCCTCCGCCGCCGAGCCCTTGCTGGGA
GTGAGCGTCGACGTGGAAATCGGCACCTTGAAGGAACTGCTGCTACAGATGGAAGAGGCTCCCGGCAGCGAC
GACGACAACGAACTGGCGCCCAGCGCGCCGATGGCTTCGGTACCGCTGGACGCGGGGATGGCCGATGCGGTG
ATGCGCCTGCTGCGCTGCCTGCAGAGCCCGCTGGACAGCCATATCCTCGGCCCGCAACTGGTCCGCGAGATC
ATCTTCCGCGCCCTGCGCAGCGAGCAGGGCAACGCCCTGCGTGCGGTGGCCGGCCGGCACAGCGGCTACGGG
CGCATGGCCAGGGCCCTGCGGCGCATCCACACCGACTACGCCAGTGCGCTGGACATCGACACCCTGGCTCGC
GAGGCGAACATGAGCGTGTCGACCTTCCACCACAACTTCAAGGCGATGACCTTCACCTCGCCCCTCCAGTAC
CTGAAGAGCGTGCGCCTGTACAAGGCCTGGAGCCTGATGGTGCAGGACGGGCTGAACGCCAGTACCGCCGCC
AACCAGGTCGGCTACGAGAGCCCCTCGCAGTTCAGCCGCGAGTTCAAGCGCTACTTCGGGCGCACGCCGAGC
GAGGAAGTCCAGGCCGCCCGCCGCTAG