ViewGene
Locus Name:
GeneID:
Location:

GeneID:2675
TrivialName: PA14_42680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42680
PAO1 Ortholog Locus:PA1688
Sequence Length:870
Protein Length:289
Start: 3797424
Stop: 3796555
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05077.1|AE004596_3 (AE004596) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 288/289 (99%), Positives = 289/289 (100%)
Sequence:
ATGCTGACCAAACGATTGCGCCAGAGCGGCGTAGTAGTCTCCTGCCTGCTCGGTAGCGTCCTCTTCATCGCC
CTGGCCTTCCTCGGCTGGCAGCGTTTCGCCCCGGCAGCCACCGTGTCCGGCTGGACCTACCGGGTAGTGCTC
GAGGACATTCCCCACGTCAGCGCCCTGGCCCGCGACCCGGACGGCCTGCTTTACGTGAGCCAAGAGTTGCAG
GACGGCAAGGGCCTGGTGTTCCGCATCGCCGCCGATGGCAGCCGCGATACGGTGCTCGACGGGCTGTCCAAG
CCCGACGGCATGGCCAGCTTCCGCGACGGCATCGCGATCAGCCAGGAGCAGGGCGCCTCGCCGGTGTTCTGG
TGGCATGCCCAGCAGGCCCGGCCGCTGTTCGACGGCATCCAGGTGGAGGGCGTCGCCAGCGACGGCCGCTAC
CTGTACGCCGCCGAGGATCGCGACCTGGACGGGCGGATTCTCCGCTACGACCCGGAGACCGGCGGACTGACG
GTACTGCGCGAGGGATTGCAGCGCTCCGAAGGGGTGGCCGCCTGCCCGGACGGAAACGTCTTCTACACGGAA
AAGAAACGTGGCCACGTCATGCGTCTGCATGAGGGGGCCGAGGACGAGGTGGTGCTGAACGGACTGAATGCA
CCGAGCTTTTTGCTGTGCGACAGCGAAGGCCTGTGGATCACCGAGGACTCGACGCATAACGCGCGAGCCTTG
CTGCTGCCGCCCGACGGGCCGCTGCAGGTGATCGTACGGCGCCTGCGTTCCGCACAGTCCCTACTGCCCATC
GGGCCCGGCCGCTACCTGCTGGCCGAGCAGGGGCGGGACCGCATTCTCGAAATCGAACGACAGAAGAGCGAA
TTGTAA
Translation:
MLTKRLRQSGVVVSCLLGSVLFIALAFLGWQRFAPAATVSGWTYRVVLEDIPHVSALARDPDGLLYVSQELQ
DGKGLVFRIAADGSRDTVLDGLSKPDGMASFRDGIAISQEQGASPVFWWHAQQARPLFDGIQVEGVASDGRY
LYAAEDRDLDGRILRYDPETGGLTVLREGLQRSEGVAACPDGNVFYTEKKRGHVMRLHEGAEDEVVLNGLNA
PSFLLCDSEGLWITEDSTHNARALLLPPDGPLQVIVRRLRSAQSLLPIGPGRYLLAEQGRDRILEIERQKSE
L*
AnnotationID:2683GeneID:2675
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 20:08:58
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1688
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5353




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22498




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37160




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2675_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2675
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4394
                           PA1688_tr
                           translation of PA1688
                           289
                           99.65
                           99.99
                           0
                           1485.0
     

     
     
128107
                           gb|AAG05077.1|AE004596_3
                           (AE004596) hypothetical protein PA1688 [Pseudomonas aeruginosa PAO1]
                           289
                           99.65
                           99.99
                           0
                           1485.0
     

     
     
128108
                           gb|AAD32693.1|AF143948_2
                           (AF143948) serine/threonine protein kinase homolog [Pseudomonas aeruginosa]
                           289
                           99.65
                           99.99
                           0
                           1485.0
     

     






      

          
GC ORFID: 45677How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1688Glimmer Score: 

          
Start: 1156485Stop: 1157354

          
Length: 870


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1688 translation of PA1688Homolog Bit Score 576.0

          
Other Homologs:  t_PA1688 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGACCAAACGATTGCGCCAGAGCGGCGTAGTAGTCTCCTGCCTGCTCGGTAGCGTCCTCTTCATCGCC 
CTGGCCTTCCTCGGCTGGCAGCGTTTCGCCCCGGCAGCCACCGTGTCCGGCTGGACCTACCGGGTAGTGCTC 
GAGGACATTCCCCACGTCAGCGCCCTGGCCCGCGACCCGGACGGCCTGCTTTACGTGAGCCAAGAGTTGCAG 
GACGGCAAGGGCCTGGTGTTCCGCATCGCCGCCGATGGCAGCCGCGATACGGTGCTCGACGGGCTGTCCAAG 
CCCGACGGCATGGCCAGCTTCCGCGACGGCATCGCGATCAGCCAGGAGCAGGGCGCCTCGCCGGTGTTCTGG 
TGGCATGCCCAGCAGGCCCGGCCGCTGTTCGACGGCATCCAGGTGGAGGGCGTCGCCAGCGACGGCCGCTAC 
CTGTACGCCGCCGAGGATCGCGACCTGGACGGGCGGATTCTCCGCTACGACCCGGAGACCGGCGGACTGACG 
GTACTGCGCGAGGGATTGCAGCGCTCCGAAGGGGTGGCCGCCTGCCCGGACGGAAACGTCTTCTACACGGAA 
AAGAAACGTGGCCACGTCATGCGTCTGCATGAGGGGGCCGAGGACGAGGTGGTGCTGAACGGACTGAATGCA 
CCGAGCTTTTTGCTGTGCGACAGCGAAGGCCTGTGGATCACCGAGGACTCGACGCATAACGCGCGAGCCTTG 
CTGCTGCCGCCCGACGGGCCGCTGCAGGTGATCGTACGGCGCCTGCGTTCCGCACAGTCCCTACTGCCCATC 
GGGCCCGGCCGCTACCTGCTGGCCGAGCAGGGGCGGGACCGCATTCTCGAAATCGAACGACAGAAGAGCGAA 
TTGTAA