ViewGene
Locus Name:
GeneID:
Location:

GeneID:2673
TrivialName: PA14_59910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59910
PAO1 Ortholog Locus:
Sequence Length:885
Protein Length:294
Start: 5334260
Stop: 5335144
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84152.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 294/294 (100%), Positives = 294/294 (100%)
Sequence:
ATGATCCGGAAGTCGACAGGCTCGCTCTTGCTAATGCTTGCCCTACCCACACTGGCCCACGCGGTGGAGATT
CTGCGCTGGGAGCGCATTCCGTTGGCCATTCCATTGACGGTCGGCCAGGAACGCATTGTCTTCGTCGACAGA
AACGTGCGAGTTGGGGTTCCTCGGGATCTGCAGGGCAAGCTGCGCGTCCAGAGTACCGGCGGCGCACTCTAC
CTGCTCGCCAACGAGCCGATTCCTCCAGCGCGCCTGCGCCTACAGGACGCGACCAATGGCGAGCAGATGCTC
ATCGATATCGCCGCCACCGAAGCAACGGCCGACCAACAGCCGCGCGAGCCGGTCAGGATCGTCGCCGGCGAG
CCAGTGGATCCGCATTATGGCCAGTCCCGGGAAGCCCAGCCATCGGCAGCAGCGAAACAGACCGAGCACGCA
GAAGCACCGAAGGCCGTGCCGCGCGAAACGCCCGTCCCCGTGGTTCTGACGCGCTATGCGGCGCAGATGCTC
TATGCCCCGCTTCGCACGGTGGAACCGGTGGATGGCGTCGGTCAGGTGCGCGTCAAGCGACAGCTCGACCTG
ACCACCCTGCTCCCCAGCCTACCCATCACGGCTACCGCCTTGGGCGCCTGGCGGCTGGACGACTACTACATC
ACGGCGGTGAAGCTGCAGAACGCCAGCGCCCAGCACCTGGCCCTGGATCCCAGGGACCTGATGGGCAATTTC
GTCGCCGCGACCTTCCAGCACCCGTACTTGGGGCCCCGGGGCGACGCCTCCGACACCACTACCGTGTATCTG
GTGACGCGCGGCCGCGGCCTTGCCGACGCGCTCCTGCCCTCCTCCATCAGCCAGATCGATCCCAAAGGAGGC
CGTCGTGGCGCTGACCGGTAA
Translation:
MIRKSTGSLLLMLALPTLAHAVEILRWERIPLAIPLTVGQERIVFVDRNVRVGVPRDLQGKLRVQSTGGALY
LLANEPIPPARLRLQDATNGEQMLIDIAATEATADQQPREPVRIVAGEPVDPHYGQSREAQPSAAAKQTEHA
EAPKAVPRETPVPVVLTRYAAQMLYAPLRTVEPVDGVGQVRVKRQLDLTTLLPSLPITATALGAWRLDDYYI
TAVKLQNASAQHLALDPRDLMGNFVAATFQHPYLGPRGDASDTTTVYLVTRGRGLADALLPSSISQIDPKGG
RRGADR*
AnnotationID:2681GeneID:2673
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 23:11:08
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:5349




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22494




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2673
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
128055
                           gb|AAP84152.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           294
                           99.99
                           99.99
                           0
                           1488.0
     

     
     
128056
                           gb|AAO54397.1|
                           (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           309
                           59.87
                           72.81
                           17
                           897.0
     

     
     
128057
                           emb|CAC86815.1|
                           (AJ344068) hypothetical protein [Pseudomonas putida]
                           311
                           56.27
                           68.16
                           26
                           807.0
     

     
     
128061
                           gb|AAN62282.1|AF440524_69
                           (AF440524) hypothetical protein [Pseudomonas aeruginosa]
                           310
                           52.90
                           62.90
                           35
                           726.0
     

     
     
128059
                           gb|AAN62144.1|AF440523_51
                           (AF440523) hypothetical protein [Pseudomonas aeruginosa]
                           316
                           51.89
                           64.55
                           35
                           758.0
     

     






      

          
GC ORFID: 45675How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL025Glimmer Score: 

          
Start: 4597939Stop: 4598823

          
Length: 885


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_RL025 294 Homolog: ORF112 / Hypothetical protein / P. putida / plasmid pWWO (CAC86815) translation of RL025Homolog Bit Score 577.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1641 (ORF: BLASTX 349.0), t_RL025 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCGGAAGTCGACAGGCTCGCTCTTGCTAATGCTTGCCCTACCCACACTGGCCCACGCGGTGGAGATT 
CTGCGCTGGGAGCGCATTCCGTTGGCCATTCCATTGACGGTCGGCCAGGAACGCATTGTCTTCGTCGACAGA 
AACGTGCGAGTTGGGGTTCCTCGGGATCTGCAGGGCAAGCTGCGCGTCCAGAGTACCGGCGGCGCACTCTAC 
CTGCTCGCCAACGAGCCGATTCCTCCAGCGCGCCTGCGCCTACAGGACGCGACCAATGGCGAGCAGATGCTC 
ATCGATATCGCCGCCACCGAAGCAACGGCCGACCAACAGCCGCGCGAGCCGGTCAGGATCGTCGCCGGCGAG 
CCAGTGGATCCGCATTATGGCCAGTCCCGGGAAGCCCAGCCATCGGCAGCAGCGAAACAGACCGAGCACGCA 
GAAGCACCGAAGGCCGTGCCGCGCGAAACGCCCGTCCCCGTGGTTCTGACGCGCTATGCGGCGCAGATGCTC 
TATGCCCCGCTTCGCACGGTGGAACCGGTGGATGGCGTCGGTCAGGTGCGCGTCAAGCGACAGCTCGACCTG 
ACCACCCTGCTCCCCAGCCTACCCATCACGGCTACCGCCTTGGGCGCCTGGCGGCTGGACGACTACTACATC 
ACGGCGGTGAAGCTGCAGAACGCCAGCGCCCAGCACCTGGCCCTGGATCCCAGGGACCTGATGGGCAATTTC 
GTCGCCGCGACCTTCCAGCACCCGTACTTGGGGCCCCGGGGCGACGCCTCCGACACCACTACCGTGTATCTG 
GTGACGCGCGGCCGCGGCCTTGCCGACGCGCTCCTGCCCTCCTCCATCAGCCAGATCGATCCCAAAGGAGGC 
CGTCGTGGCGCTGACCGGTAA