ViewGene
Locus Name:
GeneID:
Location:

GeneID:2671
TrivialName: PA14_02970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02970
PAO1 Ortholog Locus:PA0239
Sequence Length:879
Protein Length:292
Start: 259470
Stop: 260348
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03628.1|AE004462_1 (AE004462) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 291/292 (99%), Positives = 292/292 (100%)
Sequence:
ATGAACGCATCCACCTCCCCGCTGCCCGCCAGCGACCAGACCCTGCGCGGCATCCTGCTGATCTGTGCCGCG
GTGTTCCTGTTCGCCAGCCACGACGGGTTGTCCAAGTTCCTTTCCGGTTTCTACCCGATCGTCATGGTGGTC
TGGGCCCGCTACCTGGTGCACACCCTGCTGATGGTCGCCGTGTTCGTGCCGCGCAACGGCCTCGCGGTGATC
CGCACCCGCCGTCCGCTCATGCAGTTGGCGCGGGCGCTGTGCCTGATCGGCACCAGCCTGTTCTTCACCACC
GGCCTGCGCTACCTGCCCTTGGCCGAGGCGACCGCGGTGAACTTCCTGGCGCCGCTGCTGGTGACCGCGTTA
TCCGTGCCGTTACTGAAGGAGAAGGTCAGCCTCGGTCAATGGCTGGCGGTGCTCACCGGCTTCATCGGCGTG
CTCTTCATCGTGCGTCCCGGTGGCGCGCTGTTCACCCCGGCGGCGTTGTTCCCGCTCGGCTCGGCGCTGTGC
TTCGGGCTCTACCAGCTGCTCACGCGGATGCTCGCCAACAGCGACAGCCCGACCACCAGCAACTTCCTCGCC
GGCATCTTCAACACGCTCATCATGAGCCTGCTGGTGCCGTTCTTCTGGCAGACCCCAAGTCTTCTCCACGGC
CTGATGATGATCGCCCTGGGCGGTTGCGGCATGGGCGGCCACCTGCTGCTGACCCAGGCCTTCCGCCATGCG
CCGCCGGCGACCCTGGCGCCGTTCAGCTATGGCCAGATCATCTTCGCCGGCCTGCTCGGCCTGCTGGTGTTC
GGCCACGTGCCGGACGCCTGGGCGCTGCTCGGCATCCTCGTCATCTGCGCCAGCGGCCTGGTGGTCGCCTGG
CGCCGTGGCCGCTGA
Translation:
MNASTSPLPASDQTLRGILLICAAVFLFASHDGLSKFLSGFYPIVMVVWARYLVHTLLMVAVFVPRNGLAVI
RTRRPLMQLARALCLIGTSLFFTTGLRYLPLAEATAVNFLAPLLVTALSVPLLKEKVSLGQWLAVLTGFIGV
LFIVRPGGALFTPAALFPLGSALCFGLYQLLTRMLANSDSPTTSNFLAGIFNTLIMSLLVPFFWQTPSLLHG
LMMIALGGCGMGGHLLLTQAFRHAPPATLAPFSYGQIIFAGLLGLLVFGHVPDAWALLGILVICASGLVVAW
RRGR*
AnnotationID:2679GeneID:2671
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 18:06:53
Gene Name:
Confidence Code:3
GeneProduct:putative permease
Cell Localization:()
Synonyms:PA0239
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69270.1|AE016561_8 (AE016787) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 292

 Score =  402 bits (1034), Expect = e-111
 Identities = 201/291 (69%), Positives = 237/291 (81%), Gaps = 1/291 (0%)

>gb|AAO55856.1| (AE016864) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 288

 Score =  384 bits (987), Expect = e-106
 Identities = 188/281 (66%), Positives = 223/281 (79%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5345




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22490




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33593




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2671_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2671
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4389
                           PA0239_tr
                           translation of PA0239
                           292
                           99.65
                           99.99
                           0
                           1486.0
     

     
     
127983
                           gb|AAG03628.1|AE004462_1
                           (AE004462) hypothetical protein PA0239 [Pseudomonas aeruginosa PAO1]
                           292
                           99.65
                           99.99
                           0
                           1486.0
     

     
     
127984
                           gb|AAN69270.1|AE016561_8
                           (AE016787) membrane protein, putative [Pseudomonas putida KT2440]
                           293
                           69.28
                           81.22
                           2
                           1035.0
     

     
     
127985
                           gb|AAO55856.1|
                           (AE016864) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           295
                           63.72
                           75.93
                           10
                           986.0
     

     
     
127986
                           emb|CAE27592.1|
                           (BX572599) Permeases of the drug/metabolite transporter (DMT) superfamily [Rhodopseudomonas palustris CGA009]
                           307
                           37.78
                           55.37
                           18
                           534.0
     

     






      

          
GC ORFID: 45673How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0239Glimmer Score: 

          
Start: 6060811Stop: 6061689

          
Length: 879


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0239 translation of PA0239Homolog Bit Score 577.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1099 (ORF: BLASTX 389.0), t_PA0239 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCATCCACCTCCCCGCTGCCCGCCAGCGACCAGACCCTGCGCGGCATCCTGCTGATCTGTGCCGCG 
GTGTTCCTGTTCGCCAGCCACGACGGGTTGTCCAAGTTCCTTTCCGGTTTCTACCCGATCGTCATGGTGGTC 
TGGGCCCGCTACCTGGTGCACACCCTGCTGATGGTCGCCGTGTTCGTGCCGCGCAACGGCCTCGCGGTGATC 
CGCACCCGCCGTCCGCTCATGCAGTTGGCGCGGGCGCTGTGCCTGATCGGCACCAGCCTGTTCTTCACCACC 
GGCCTGCGCTACCTGCCCTTGGCCGAGGCGACCGCGGTGAACTTCCTGGCGCCGCTGCTGGTGACCGCGTTA 
TCCGTGCCGTTACTGAAGGAGAAGGTCAGCCTCGGTCAATGGCTGGCGGTGCTCACCGGCTTCATCGGCGTG 
CTCTTCATCGTGCGTCCCGGTGGCGCGCTGTTCACCCCGGCGGCGTTGTTCCCGCTCGGCTCGGCGCTGTGC 
TTCGGGCTCTACCAGCTGCTCACGCGGATGCTCGCCAACAGCGACAGCCCGACCACCAGCAACTTCCTCGCC 
GGCATCTTCAACACGCTCATCATGAGCCTGCTGGTGCCGTTCTTCTGGCAGACCCCAAGTCTTCTCCACGGC 
CTGATGATGATCGCCCTGGGCGGTTGCGGCATGGGCGGCCACCTGCTGCTGACCCAGGCCTTCCGCCATGCG 
CCGCCGGCGACCCTGGCGCCGTTCAGCTATGGCCAGATCATCTTCGCCGGCCTGCTCGGCCTGCTGGTGTTC 
GGCCACGTGCCGGACGCCTGGGCGCTGCTCGGCATCCTCGTCATCTGCGCCAGCGGCCTGGTGGTCGCCTGG 
CGCCGTGGCCGCTGA